Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00009 ATGTCACGGAAGGGTTTGATGGAACAGGACTTAAAGAAATTGGATGTGACAAAGCTCCATCCACTATCACCAGAAGTTATATCTCGTCAAGCTACCATTAATATTGGTACTATTGGTCATGTGGCACATGGGAAATCTACTGTTGTAAAAGCAATTTCAGGAGTCCAGACAGTACGTTTTAAGAATGAGTTGGAGCGTAACATTACCATTAAGCTGGGATATGCTAATGCAAAGATATACAAATGTGAAGATGACAAGTGCCCTCGTCCAATGTGCTACAAGGCGTATGGAAGTGGAAAGGAAGACAGTCCTGTATGTGATGTACCTGGGTTTGAAAATTGCAGGATGAAACTATTGCGACACGTATCCTTTGTTGACTGCCCGCACCTTGCTGCTGTTGAAATTATGCGCCTTCAACATATTATAATCCTCCAGAATAAAGTTGATCTTATTCAAGAAAATGTAGCAATCAATCAACATGAAGCAATTCAAAAATTTATTCAAGGAACTGTTGCCGATGGTGCACCAGTAGTACCAATTTCTGCTCAGCTGAAGTACAATATTGATGTCGTTTGCGAGTATATAGTGAAAAAGATTCCAATTCCTGAAAGGAATTTTGTCTCTCCGCCTAATATGATTGTGATTCGATCTTTTGATGTTAACAAACCTGGATTTGAAGTTGACGAGATCAAAGGTGGTGTGGCTGGTGGTAGCATATTACGGGGTGTTTTAAAGGTGAATCAATTTATTGAAGTTCGTCCGGGGATTGTGGTTAAGGATGAAAGTGGTAACATCAAGTGCACCCCAATATACTCGAGGATTGTTTCTTTGTATGCTGAGCAAAATGAGCTGCAATTTGCAGTCCCTGGAGGTCTTATTGGAGTTGGCACAACCATGGATCCCACTTTGACTCGTGCTGACAGATTGGTTGGTCAGGTTCTTGGAGAAGTCGGATCACTTCCTGATGTTTTTGTTGAGCTAGAGGTGAACTTTTTCCTTCTGCGGCGGCTCCTAGGTGTCAGGACGAAAGGATCAGAAAGGCAGGGAAAAGTATCAAAATTGGCTAAGGGAGAGATTCTAATGTTGAACATAGGATCCATGTCTACAGGAGCTAGAGTACTTGCAGTTAAGAATGATTTAGCAAAGTTGCAGCTTACCTCTCCTGTTTGCACCAGCAAGGGGGAGAAGATTGCTCTAAGTCGTCGAGTTGAGAAGCACTGGCGTCTTATTGGCTGGGGTCAAATTCAAGCTGGAACGACCCTCGACGTTCCCCCTTGCCCCATTTGA 1287 42.5 MSRKGLMEQDLKKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDKCPRPMCYKAYGSGKEDSPVCDVPGFENCRMKLLRHVSFVDCPHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIQKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFVSPPNMIVIRSFDVNKPGFEVDEIKGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLYAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPDVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKGEILMLNIGSMSTGARVLAVKNDLAKLQLTSPVCTSKGEKIALSRRVEKHWRLIGWGQIQAGTTLDVPPCPI 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 49972 55066 + Cp4.1LG01g06610.1 Cpe01g00009 461322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00009 428 Gene3D Translation factors 206 320 - -
Cpe01g00009 428 CDD eIF2_gamma_II 205 318 IPR044127 GO:0000049
Cpe01g00009 428 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 319 416 IPR009001 -
Cpe01g00009 428 Pfam Initiation factor eIF2 gamma, C terminal 326 415 IPR015256 -
Cpe01g00009 428 Pfam Elongation factor Tu domain 2 232 314 IPR004161 GO:0005525
Cpe01g00009 428 Gene3D Translation factors 321 420 - -
Cpe01g00009 428 SUPERFAMILY Translation proteins 204 318 IPR009000 -
Cpe01g00009 428 Gene3D - 30 130 IPR027417 -
Cpe01g00009 428 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 200 IPR027417 -
Cpe01g00009 428 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 129 427 - -
Cpe01g00009 428 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER 129 427 - -
Cpe01g00009 428 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER 1 128 - -
Cpe01g00009 428 Gene3D - 131 204 IPR027417 -
Cpe01g00009 428 CDD eIF2_gamma_III 321 415 IPR015256 -
Cpe01g00009 428 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 1 128 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00009 Cpe-Chr1:49972 Cpe01g00886 Cpe-Chr1:5222481 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00009 K03242 - csv:116403970 820.846