Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe01g00009 | ATGTCACGGAAGGGTTTGATGGAACAGGACTTAAAGAAATTGGATGTGACAAAGCTCCATCCACTATCACCAGAAGTTATATCTCGTCAAGCTACCATTAATATTGGTACTATTGGTCATGTGGCACATGGGAAATCTACTGTTGTAAAAGCAATTTCAGGAGTCCAGACAGTACGTTTTAAGAATGAGTTGGAGCGTAACATTACCATTAAGCTGGGATATGCTAATGCAAAGATATACAAATGTGAAGATGACAAGTGCCCTCGTCCAATGTGCTACAAGGCGTATGGAAGTGGAAAGGAAGACAGTCCTGTATGTGATGTACCTGGGTTTGAAAATTGCAGGATGAAACTATTGCGACACGTATCCTTTGTTGACTGCCCGCACCTTGCTGCTGTTGAAATTATGCGCCTTCAACATATTATAATCCTCCAGAATAAAGTTGATCTTATTCAAGAAAATGTAGCAATCAATCAACATGAAGCAATTCAAAAATTTATTCAAGGAACTGTTGCCGATGGTGCACCAGTAGTACCAATTTCTGCTCAGCTGAAGTACAATATTGATGTCGTTTGCGAGTATATAGTGAAAAAGATTCCAATTCCTGAAAGGAATTTTGTCTCTCCGCCTAATATGATTGTGATTCGATCTTTTGATGTTAACAAACCTGGATTTGAAGTTGACGAGATCAAAGGTGGTGTGGCTGGTGGTAGCATATTACGGGGTGTTTTAAAGGTGAATCAATTTATTGAAGTTCGTCCGGGGATTGTGGTTAAGGATGAAAGTGGTAACATCAAGTGCACCCCAATATACTCGAGGATTGTTTCTTTGTATGCTGAGCAAAATGAGCTGCAATTTGCAGTCCCTGGAGGTCTTATTGGAGTTGGCACAACCATGGATCCCACTTTGACTCGTGCTGACAGATTGGTTGGTCAGGTTCTTGGAGAAGTCGGATCACTTCCTGATGTTTTTGTTGAGCTAGAGGTGAACTTTTTCCTTCTGCGGCGGCTCCTAGGTGTCAGGACGAAAGGATCAGAAAGGCAGGGAAAAGTATCAAAATTGGCTAAGGGAGAGATTCTAATGTTGAACATAGGATCCATGTCTACAGGAGCTAGAGTACTTGCAGTTAAGAATGATTTAGCAAAGTTGCAGCTTACCTCTCCTGTTTGCACCAGCAAGGGGGAGAAGATTGCTCTAAGTCGTCGAGTTGAGAAGCACTGGCGTCTTATTGGCTGGGGTCAAATTCAAGCTGGAACGACCCTCGACGTTCCCCCTTGCCCCATTTGA | 1287 | 42.5 | MSRKGLMEQDLKKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDKCPRPMCYKAYGSGKEDSPVCDVPGFENCRMKLLRHVSFVDCPHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIQKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFVSPPNMIVIRSFDVNKPGFEVDEIKGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLYAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPDVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKGEILMLNIGSMSTGARVLAVKNDLAKLQLTSPVCTSKGEKIALSRRVEKHWRLIGWGQIQAGTTLDVPPCPI | 428 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 49972 | 55066 | + | Cp4.1LG01g06610.1 | Cpe01g00009 | 461322 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe01g00009 | 428 | Gene3D | Translation factors | 206 | 320 | - | - | |
Cpe01g00009 | 428 | CDD | eIF2_gamma_II | 205 | 318 | IPR044127 | GO:0000049 | |
Cpe01g00009 | 428 | SUPERFAMILY | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 319 | 416 | IPR009001 | - | |
Cpe01g00009 | 428 | Pfam | Initiation factor eIF2 gamma, C terminal | 326 | 415 | IPR015256 | - | |
Cpe01g00009 | 428 | Pfam | Elongation factor Tu domain 2 | 232 | 314 | IPR004161 | GO:0005525 | |
Cpe01g00009 | 428 | Gene3D | Translation factors | 321 | 420 | - | - | |
Cpe01g00009 | 428 | SUPERFAMILY | Translation proteins | 204 | 318 | IPR009000 | - | |
Cpe01g00009 | 428 | Gene3D | - | 30 | 130 | IPR027417 | - | |
Cpe01g00009 | 428 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 30 | 200 | IPR027417 | - | |
Cpe01g00009 | 428 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 | 129 | 427 | - | - | |
Cpe01g00009 | 428 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER | 129 | 427 | - | - | |
Cpe01g00009 | 428 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER | 1 | 128 | - | - | |
Cpe01g00009 | 428 | Gene3D | - | 131 | 204 | IPR027417 | - | |
Cpe01g00009 | 428 | CDD | eIF2_gamma_III | 321 | 415 | IPR015256 | - | |
Cpe01g00009 | 428 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 | 1 | 128 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g00009 | Cpe-Chr1:49972 | Cpe01g00886 | Cpe-Chr1:5222481 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe01g00009 | K03242 | - | csv:116403970 | 820.846 |