Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00013 ATGGTAGAAAAGACAAGTGCTGAGATGAGTATGAAGATGCAGCAGGGCCACCACTCAGTGGCTGTGAGGTATAATGAGCAAATTGGAAGCAAAAAAGGGGTCACCTTCATTCAAGCCAACAGGGCTTGGCTTCCCAAGTTCTTGTTGCTTTGGGTTCTGTTGGTGGCATTCATTAGTATGCTGATCTACAAGGGAATGGAGGCTGACAACAAGGTTAGAAGAAGGGAAGTCTTGGGGAGCATGTGTGACCAGAGGGCAAGGATGCTTCAGGATCAATTCAGTGTCAGTGTCAACCACGTCCATGCTTTGGCTATTCTCATTTCCACTTTCCACTACTTCAAGAACATATCAGCAATCGATCAGGAAACTTTTGCTGAGTACACAGCCAGAACTGCTTTCGAGCGGCCTTTGCTCAGTGGTGTGGCATTTGCGCAAAGAGTGGTGCACTCGGAGCGAGAGAAATTCGAGATGCAACATGGTTGGACTATAAAAACGATGGAAAGGGAAGCATCGCCTATAAGGGATGAGTATGCGCCAGTCATATTTTCCCAGGAAACTGTTTCCTACATTGAATCTCTTGATATGATGTCTGGAGAGGAGGACCGTGAAAACATTTTGAGATCAAGAGAAACAGGTAAAGCTGTTTTAACGAGCCCTTTCAGACTACTGGGTTCTCACCATCTTGGAGTTGTGCTGACGATCCCTGTTTATAAAACCAAGCTTCCGGCAAATCCAACTATGGATGAGCGAACTCGAGCAACAGCAGGTTACCTTGGTGGAGCATTTGATGTGGAATCACTTGTCGAAAATTTGCTTGGGCAACTTGCTGGAAATCAGGCTATTTTGGTGCATGTATACGATATCACGAACTATTCTGATCCCCTAGTAATGTATGGTCATCAATATGAAGATGGAGACATGTCTCTTTTGCACGAAAGCAAATTAGATTTTGGAGATCCATTTAGGAAGCATGAGATGATATGCAGATATCATCAGAAAGCACCAACATTATGGACGGCACTTACTACTGCATTCTTATTCTTTGTGATTGGATTGTTAGTGGGATATATATTATACGGTGCAGCAACTCATATCGTTAAAGTCGAGGACGATTTCCATGAAATGCAAGAATTGAAAGTTCTAGCTGAAGCTGCTGATGTTGCAAAATCTCAGTTTCTTGCCACCGTCTCTCATGAAATCAGGACACCCATGAATGGCATCCTTGGAATGCTTGCTCTACTTCTAGATACGGAATTGAGTTCAACTCAAAGGGATTACGCTCAAACTGCCAAGGCCTGTGGAAAAGCACTGATAGCGCTAATAAATGAAGTGCTTGACCGGGCGAAAATTGAAGCAGGGAAGTTGGAGCTTGAGGCGGTTCCTTTTGACCTTAGATTGATACTAGATGATGTTCTGTCTTTGTTTTCTGAAAAGTCACGGCACAAGGGAGTAGAGTTGGCAGTGTTTGTTTCTGACAGAGTTCCTGAAATCGTTATGGGGGATCCTGGAAGGTTCAGACAAGTAATCACAAATCTTGTGGGCAACTCTGTAAAATTCACAGAACAAGGACATATATTTGTCAAAGTCCAATTAGCCGAACAATCAATGGCTTCTACGAATATCAAATCTGAAACTCATGTGAACGGAAACTTAGATGATGGTGCATCCTACAATAAGCATCAGTTTCAAACCTTAAGTGGATGTGAGGCCGCTGATAACCAAAACAGTTGGGATACTTTCAAGCATCTCATTGCAAATGACGAACGGCCAAACACTTCAAGCAATTTTACGGTTACGAATGAAAGTTCTGATATTGTTACTGTTATGATATCGGTGGAAGATACAGGAATCGGGATTCCCTTATGTGCCCAAGGTCGAGTCTTTACGCCCTTCATGCAAGCAGATAGCTCAACCTCTAGAAACTATGGTGGAACTGGTATTGGCTTAAGCATCAGTAAGTGTCTGGTAGAACTAATGGGCGGTCAGATAACCTTTGTAAGCCGTCCCGAGGTTGGAAGCACCTTCTCATTCACTGCTGTGTTTGGAAAATGTGAGAAGAAAGCGACAGTCGACATTAAAAAGCCTAATTTGGAGGAACTCCCTTCTGCATTTAGAGGACTGAAATCTGTCGTAATTGATGGGAAACCAGTTAGAGCTGCTGTGACCAAATACCATTTGAAGAGACTTGGCATCCTGGTGGAAGTTGCCAGTAGTGTCAAGATGGCTGCAGCTTTATGGGGAAAAAATGGCTCTGTTAGATCAAGTAATATCTTTCAGCCGGACGTAATTTTTCTTGAGAAAGATATCTTTTTTTCAAGTGAGGAACGTGGTTCTTCTAATCTACTTCATCAACTAGACTGGAAGCAGAATGGTCATGCCTTTAAGTTGCCGAAATTAATCCTTCTCGCGACCAGCATAAGCACGGATGAATTTGATAAAGCGAAGGAAGCAGGTTTTTCAGACACCTTGGTCATGAAACCACTAAGAGCAAGCATGATAGGTGCATGTCTTCAACAGGTGCTTGGCTCGGGAAAGAAACGGCAGCTTGGAAAGGGCACGGCAAATGGGTCCAACTTTCTTAGAGGTAAGAAAATATTGGTCGTTGATGACAATATGGTGAACCGAAGAGTCGCTGCAGGTGCCTTGAAGAAATTTGGTGCCGATGTAGAGTGTGCTGAGAGTGGAAAAGCTGCTCTGACATTGCTTCAACTTCCACACAGTTTTGACGCTTGCTTTATGGATATTCAGATGCCAGAAATGGATGGATTCGAAGTGACCCGAAGAATCAGGCTGATGGAGAGCAAGGCAAAGGAAGCAGTGGTTAGAGAATCTGGTGGGAAAGAAAATGCAAGGAAAGATGAGTGGCATGTTCCAATATTAGCCATGACCGCGGACGTTATTCACGCAACGTGCGACAAGTGCCAGGCAAGTGGGATGGATGGATACGTATCAAAACCATTCGAGGAAGAGAATCTGTACCAGGCAGTTTCCAAGTGTTTCGATTTAAAGGCCATCACGGATTCTTGA 3027 43.74 MVEKTSAEMSMKMQQGHHSVAVRYNEQIGSKKGVTFIQANRAWLPKFLLLWVLLVAFISMLIYKGMEADNKVRRREVLGSMCDQRARMLQDQFSVSVNHVHALAILISTFHYFKNISAIDQETFAEYTARTAFERPLLSGVAFAQRVVHSEREKFEMQHGWTIKTMEREASPIRDEYAPVIFSQETVSYIESLDMMSGEEDRENILRSRETGKAVLTSPFRLLGSHHLGVVLTIPVYKTKLPANPTMDERTRATAGYLGGAFDVESLVENLLGQLAGNQAILVHVYDITNYSDPLVMYGHQYEDGDMSLLHESKLDFGDPFRKHEMICRYHQKAPTLWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFHEMQELKVLAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTELSSTQRDYAQTAKACGKALIALINEVLDRAKIEAGKLELEAVPFDLRLILDDVLSLFSEKSRHKGVELAVFVSDRVPEIVMGDPGRFRQVITNLVGNSVKFTEQGHIFVKVQLAEQSMASTNIKSETHVNGNLDDGASYNKHQFQTLSGCEAADNQNSWDTFKHLIANDERPNTSSNFTVTNESSDIVTVMISVEDTGIGIPLCAQGRVFTPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQITFVSRPEVGSTFSFTAVFGKCEKKATVDIKKPNLEELPSAFRGLKSVVIDGKPVRAAVTKYHLKRLGILVEVASSVKMAAALWGKNGSVRSSNIFQPDVIFLEKDIFFSSEERGSSNLLHQLDWKQNGHAFKLPKLILLATSISTDEFDKAKEAGFSDTLVMKPLRASMIGACLQQVLGSGKKRQLGKGTANGSNFLRGKKILVVDDNMVNRRVAAGALKKFGADVECAESGKAALTLLQLPHSFDACFMDIQMPEMDGFEVTRRIRLMESKAKEAVVRESGGKENARKDEWHVPILAMTADVIHATCDKCQASGMDGYVSKPFEEENLYQAVSKCFDLKAITDS 1008
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 77826 89591 + Cp4.1LG01g06540.1 Cpe01g00013 461326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00013 1008 CDD HisKA 388 449 IPR003661 GO:0000155|GO:0007165
Cpe01g00013 1008 PANTHER TWO-COMPONENT HISTIDINE KINASE 29 1002 - -
Cpe01g00013 1008 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 378 454 IPR036097 GO:0000155|GO:0007165
Cpe01g00013 1008 Gene3D - 66 118 - -
Cpe01g00013 1008 SUPERFAMILY CheY-like 860 1001 IPR011006 -
Cpe01g00013 1008 SMART CHASE_2 115 300 IPR006189 -
Cpe01g00013 1008 PRINTS Bacterial sensor protein C-terminal signature 608 622 IPR004358 GO:0016310|GO:0016772
Cpe01g00013 1008 PRINTS Bacterial sensor protein C-terminal signature 626 636 IPR004358 GO:0016310|GO:0016772
Cpe01g00013 1008 PRINTS Bacterial sensor protein C-terminal signature 643 661 IPR004358 GO:0016310|GO:0016772
Cpe01g00013 1008 PRINTS Bacterial sensor protein C-terminal signature 667 680 IPR004358 GO:0016310|GO:0016772
Cpe01g00013 1008 ProSiteProfiles Response regulatory domain profile. 708 841 IPR001789 GO:0000160
Cpe01g00013 1008 CDD HATPase_EvgS-ArcB-TorS-like 505 681 - -
Cpe01g00013 1008 PANTHER HISTIDINE KINASE 4 29 1002 - -
Cpe01g00013 1008 SUPERFAMILY CheY-like 705 842 IPR011006 -
Cpe01g00013 1008 Pfam Response regulator receiver domain 865 996 IPR001789 GO:0000160
Cpe01g00013 1008 ProSiteProfiles Histidine kinase domain profile. 395 683 IPR005467 -
Cpe01g00013 1008 Gene3D - 361 451 - -
Cpe01g00013 1008 ProSiteProfiles Response regulatory domain profile. 864 1000 IPR001789 GO:0000160
Cpe01g00013 1008 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 500 680 IPR003594 -
Cpe01g00013 1008 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 442 678 IPR036890 -
Cpe01g00013 1008 Gene3D - 452 686 IPR036890 -
Cpe01g00013 1008 CDD REC_hyHK_CKI1_RcsC-like 865 996 - -
Cpe01g00013 1008 Gene3D CHASE domain 119 334 IPR042240 -
Cpe01g00013 1008 Coils Coil 438 458 - -
Cpe01g00013 1008 Pfam His Kinase A (phospho-acceptor) domain 388 453 IPR003661 GO:0000155|GO:0007165
Cpe01g00013 1008 Gene3D - 858 1006 - -
Cpe01g00013 1008 ProSiteProfiles CHASE domain profile. 115 327 IPR006189 -
Cpe01g00013 1008 Pfam CHASE domain 118 298 IPR006189 -
Cpe01g00013 1008 SMART REC_2 863 996 IPR001789 GO:0000160
Cpe01g00013 1008 SMART HisKA_10 388 453 IPR003661 GO:0000155|GO:0007165
Cpe01g00013 1008 SMART HKATPase_4 500 683 IPR003594 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00013 Cpe-Chr1:77826 Cpe13g00429 Cpe-Chr13:4620451 0 dispersed
Cpe01g00013 Cpe-Chr1:77826 Cpe01g01858 Cpe-Chr1:15849312 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48712 PF02518 HATPase_c 7.90E-32 CL0025 Cpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00013 K14489 - csv:101204531 1769.21