Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00029 ATGAAACTTATGGTTTTGAGGTATTCTCCATTTTTCTTGGTCTTGTTGGTTTGTGTACTGCCTCTGGTTCGAGCTGGAGATGCAGAAGCTCTGTTAGCATTGAAAGCATCTCTCGACCCTGGGAACTCGCTGCCATGGCGAGGAAGTTCCATCTGCAACTGGCAAGGCGTAAAAGAGTGCACAAATGGACGGGTAACTAAGCTCGTTTTGGAACATCTAAATCTCTCTGCTGTTCTTAACGACAAAATTTTGAATCGTTTAGATCAGCTTCGTGTTCTTAGTTTCAAAGGAAATTCACTTTCTGGTCAAATCCCTGACCTTTCGGGTCTCGTTAATCTCAAATCCCTCTATCTAAGCGACAACAACTTTTCCGGCGAGTTTCCGAGCTCCATCTCCGACCTTCACCGCCTGAAGGTCGTCGTCGTTTCCGGTAACCAAATATCTGGCCCCATTCCAGACTCGCTGCTGAAACTCCGGCGTCTCTATGTTCTACACCTTCAGGACAACCAATTCAGTGGCTCCATCCCTCCTTTCAAGCAAACCAGTCTTCGATTCTTCAATGTCTCTAACAACCGACTCTCCGGCGACATCCCAGTAACCCCCACCTTGGTCCGCTTCAATGTGTCGTCATTTTCCGGCAACCTGGAACTTTGCGGAGAACAAATTCAGAAGCCCTGTGGAAATGTTGCCATTGCGCCATCATCGAGTCGCTCTTATCCGCAAGTCACTGGCTCAAGCTCGTCTTCAAGACGCACCAAATTGGTCAAGATAATAGCAGGAAGCGTTGGTGGGTTTGTCGGACTTCTATTGATCATTCTTCTACTGTTTATGATTTGCAAATGCAGGGAAAGAAAGAGTCTATCCGAGGTCAGAAACAAAGGAATCGACGACGAGGGAATGAGGATGGAGGAAGCATCTGGAATCTCCGCCGGCGGCAGAGGAGGTAATAATGGAGGAAAGCAAGGGGGATTTTCATGGGAAAGTGAAGGACTAGGAAGCCTAGTGTTCTGCGGAGCAGGGGATGAGAAAATGACTTATAGCTTGGAAGATCTGTTGAAAGCTTCGGCGGAGACTTTGGGCAGAGGGACCATGGGAAGCACATACAAGGCTGTGATGGAATCTGGGTATATTGTTACAGTGAAACGGCTGAAGGATGCAAGGTACCCTCGAGCAGAGGAGTTCGGACGGCAGATGGAGGTTCTTGGGCGGCTCAGACACCCCAACCTGGTCCCTCTCAGGGCCTATTTCCAGGCTAAGGAAGAACGCTTGCTCGTATATGATTATTTCCCTAATGGCAGTCTCTTCTCTCTCATCCACGGATCGAGAACTTCAGGCGGAGGAAAGCCTCTTCATTGGACATCCTGCCTTAAAATAGCTGAAGACTTGGCCAATGGTTTGTTGTATATCCACCAGAACCCTGGCTTAACCCATGGAAACCTGAAATCCTCAAATGTACTACTAGGATCTGATTTCGAAGAAGAGGAGACAGAGTCTGGGGATGATCCTGCATCTGGGAACGAGGCATCGGAAGAGAAACTTCAAGCTCTTTTGAACATTGCAATGGCTTGTGTTTCGCTGATGCCACAAAACCGACCAATGATGAGAGAAGTTCTAAAGATGATAAGAGATACAAGAGCAGAGGCTCAAATCTCATCCAACAGTAGTGACCATTCACCAGGTAGCTGGTCTGATATTGTCCAGAGTTTGCCCAGGGATGAACATTTAGTTTCAACAAAACAAGAAGCAGAGAAGGAGCGAGCTGATGCACTTGGTTCATCCTCGTCTTGCTGTTCATTTGATAGGAAATAA 1809 47.43 MKLMVLRYSPFFLVLLVCVLPLVRAGDAEALLALKASLDPGNSLPWRGSSICNWQGVKECTNGRVTKLVLEHLNLSAVLNDKILNRLDQLRVLSFKGNSLSGQIPDLSGLVNLKSLYLSDNNFSGEFPSSISDLHRLKVVVVSGNQISGPIPDSLLKLRRLYVLHLQDNQFSGSIPPFKQTSLRFFNVSNNRLSGDIPVTPTLVRFNVSSFSGNLELCGEQIQKPCGNVAIAPSSSRSYPQVTGSSSSSRRTKLVKIIAGSVGGFVGLLLIILLLFMICKCRERKSLSEVRNKGIDDEGMRMEEASGISAGGRGGNNGGKQGGFSWESEGLGSLVFCGAGDEKMTYSLEDLLKASAETLGRGTMGSTYKAVMESGYIVTVKRLKDARYPRAEEFGRQMEVLGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIHGSRTSGGGKPLHWTSCLKIAEDLANGLLYIHQNPGLTHGNLKSSNVLLGSDFEEEETESGDDPASGNEASEEKLQALLNIAMACVSLMPQNRPMMREVLKMIRDTRAEAQISSNSSDHSPGSWSDIVQSLPRDEHLVSTKQEAEKERADALGSSSSCCSFDRK 602
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 206335 211397 - Cp4.1LG01g06220.1 Cpe01g00029 461342
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00029 602 Gene3D Phosphorylase Kinase; domain 1 336 428 - -
Cpe01g00029 602 Pfam Leucine rich repeat N-terminal domain 26 57 IPR013210 -
Cpe01g00029 602 Gene3D Ribonuclease Inhibitor 181 229 IPR032675 -
Cpe01g00029 602 ProSiteProfiles Protein kinase domain profile. 353 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g00029 602 SUPERFAMILY Protein kinase-like (PK-like) 357 491 IPR011009 -
Cpe01g00029 602 Gene3D Transferase(Phosphotransferase) domain 1 429 500 - -
Cpe01g00029 602 MobiDBLite consensus disorder prediction 574 588 - -
Cpe01g00029 602 Pfam Leucine rich repeat 112 171 IPR001611 GO:0005515
Cpe01g00029 602 Pfam Protein kinase domain 356 488 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g00029 602 SUPERFAMILY L domain-like 29 218 - -
Cpe01g00029 602 MobiDBLite consensus disorder prediction 548 565 - -
Cpe01g00029 602 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 493 567 - -
Cpe01g00029 602 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 11 492 - -
Cpe01g00029 602 Gene3D Ribonuclease Inhibitor 25 180 IPR032675 -
Cpe01g00029 602 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 493 567 - -
Cpe01g00029 602 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 11 492 - -
Cpe01g00029 602 MobiDBLite consensus disorder prediction 548 602 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00029 Cpe-Chr1:206335 Cpe01g00897 Cpe-Chr1:5271688 4.14E-43 dispersed
Cpe01g00029 Cpe-Chr1:206335 Cpe10g00446 Cpe-Chr10:2605039 2.38E-130 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62099 PF00069 Pkinase 2.10E-18 CL0016 Cpe PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00029 - - cmax:111483350 902.508