Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00033 ATGGCGGTTCTACCAACCAACTCTTCAAGATTGGATCTCACCATCTCTGTACCCGGCTTCACTTCATTCTCATCATCACCACTTCCTCCATCTGCGGTGCGAGATTTGGACATGAATAGAGCGCCGGATGAAGAGGAATGGATGATGGGAAGCATGGAGGAAGATGAAGAAAACAACAGTGGAAGCCATCCAAGGAAGAAGCTACGTTTAACAAAGGAACAGTCTCATCTTCTTGAACAAAGCTTCAGACAAAACCATACCTTAAACCCAAAACAAAAGGAGACTCTTGCGGAAGTGCTGAAGCTGAAGCCAAGGCAGGTTGAGGTTTGGTTTCAGAACCGAAGGGCCAGGAGCAAGCTGAAGCAGACCGAGATGGAGTGCGAGTATCTGAAGAGATGGTTCGGGCTCTTGACGGAGCAAAACAAGAAACTGCAGAAGGAGGTGGAGGAGCTGAGGGCGATGAAGGTGGCGCCCCCGACGGTGATTTCACCACACAGCTGCGAGCCGCTGCCGGCGTCGAACCTCACAATGTGTCCACGCTGCGAGCGCGTGACCACTACCACCCTCGACAAGACCCGCATTGTCGTTTAA 591 51.61 MAVLPTNSSRLDLTISVPGFTSFSSSPLPPSAVRDLDMNRAPDEEEWMMGSMEEDEENNSGSHPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKKLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTTLDKTRIVV 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 229314 231263 - Cp4.1LG01g06250.1 Cpe01g00033 461346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00033 196 Pfam Homeobox associated leucine zipper 121 155 IPR003106 GO:0006355|GO:0043565
Cpe01g00033 196 ProSitePatterns 'Homeobox' domain signature. 96 119 IPR017970 GO:0000981|GO:0006355
Cpe01g00033 196 ProSiteProfiles 'Homeobox' domain profile. 61 121 IPR001356 GO:0003677
Cpe01g00033 196 PANTHER - 1 191 - -
Cpe01g00033 196 SMART halz 121 164 IPR003106 GO:0006355|GO:0043565
Cpe01g00033 196 Pfam Homeodomain 65 119 IPR001356 GO:0003677
Cpe01g00033 196 SMART HOX_1 63 125 IPR001356 GO:0003677
Cpe01g00033 196 Gene3D - 57 127 - -
Cpe01g00033 196 SUPERFAMILY Homeodomain-like 51 122 IPR009057 -
Cpe01g00033 196 CDD homeodomain 64 122 IPR001356 GO:0003677
Cpe01g00033 196 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17 1 191 - -
Cpe01g00033 196 Coils Coil 134 157 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00033 Cpe-Chr1:229314 Cpe10g00508 Cpe-Chr10:2995591 2.82E-50 dispersed
Cpe01g00033 Cpe-Chr1:229314 Cpe19g00701 Cpe-Chr19:5513364 7.08E-51 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48713 PF00046 Homeodomain 1.10E-16 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00033 K09338 - csv:101222713 346.665