Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00039 ATGGCCGGATTTGTGGCCAGCGACAGCGACAGTCCACCAGATGTGGCTCTACTGGACTTTGTTCGAGATGTTGTTCGAATGTCGGCGGGGACGAACAGTCTAAAGGTTTTCAAAAAGGATTGCACCGATCTCGTGCGTCGGATCGTGCTTTTGACGCATTTGTTTGAGGAAATCAGAGAATTTAATGGCGTCCAATTTCGACCTGTTCATACATCTTGCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGGGAGTGATTCATCTCCGAGTCCGTGGCTGTGTGATTTGGTGGCAGCATTGAAGGATACTAAACGCCTTGTTTTCATCGCTTCGACTTTCCGGTCCTGCAGTTCTTCTTCTGAGGAAGTTACCAGGAAGATACTCTTCCAATTCCAATGTGTGACGCTGAAGTTAGAGAAGGCTTTGGGAAATCTTCCTTATGATCGCTTTGATATATCAGAGGAAGTTCAAGAAGAGGTTGAATTAGTGAGAGCTCAGTTGAGGAGAGCAGCAGAAAAATATGGCTCTCTGACCGCAATTCCTCCTTCAGTTGTTCAATCTCAGTTGCTAAAGAAAAACATGGATATGTTGAATCTGAACAACTGGGCTGATAACTTTGATGTTGAGGAGAATGGTGTTGTTGATCATGAGATTACAGTGAAATTTGATGAATTCCCAAATTGCAGAGGCTTCACGAATAATGGTGTGGATCAGCTGATTTTCGAAGGACTTGAGAAGAAACTTCCATCCCCCTCAGAGGCTTGTTCTGATGGACAGGATGACTCTACCAAAAAGAGTGGAGATCAGGTGAAGAACTCAGATGGAGTTTCAATACCTGATGATTTTTTATGCCCCATTTCCCTGGAAATAATGAGGGATCCTGTTATTGTGTCCACAGGACAGACGTATGAGAGATCTTATGTGCAAAGGTGGATAGATTGTGGGAATACTACTTGTCCCAAAACTCAGCAGAAACTCCAAAACTTGACTCTCACCCCAAATTATGTACTGCGAAGTCTTATTACTCAATGGTGTGTTGATCACAATATTGAGCAACCGACAGGATTAACCAATGGAAAGATCAAAAAGTGTGATGGATCATACCGTGATGTGTGTGAGGAGATGGCAGCCATTGAAACTCTGGTGCGCAAGCTAACTAGCCATTCGATCGCGGAGCAGAGAGCTTCTGTGACCGAAATTCGATCTCTATCAAAAAGAAGCACGGATAATAGAATGCTGATAGCTGAAGCAGGAGCAATACCAAATTTGGTCAATTTGTTAACTGCTGATGATGTTTTAATACAAGAGAATGCAGTTACTTCCATTCTCAACCTTTCAATATATGAGAACAACAAGGGATTGATTATGCTTGCTGGTGCAGTACCTTCCATTGTCCAAGTTCTGAGAGTTGGGAGCATGGAAGCGAGAGAAAATGCAGCAGCTACACTTTTCAGCTTGTCTCTTGCTGATGAAAATAGGATAATCATTGGTGCTTCTGGGGCCACTCCGGCTCTTGTGGATTTACTTGAAACTGGAAGCCCAAGAGGGAAAAAGGATGCTGCAACCGCACTATTTAATTTGTGTATTTATCAGGGGAATAAGGGAAGGGCTGTGAGGGCAGGGATCATCCCAGCTCTATTAAGGATGCTCAACGTCTCAGGTAACTCCATGGTCGACGAAGCTCTCACGATAATGTCGGTCCTAGCCAGCCATCAAGAAGCAAAAGTAGCCATGGTGAAAGCCAGTACCATACCTGTTCTAATAGATCTGCTGAGGACTGGATTGGCTCGCAACAAAGAAAATGCTGCTGCTATTTTGCTTGCTCTATGTAAACGAGATACCGACAACCTTTGTTGCATAAGTAGGCTTGGGGCTAAGATTCCGCTGACTGAACTCTCCAAGAGCGGCACAGAGAGAGCAAAAAGGAAGGCTGCCTCACTGTTGGAACATCTTGGAAAACTACAGCAGCTATAG 1989 44.04 MAGFVASDSDSPPDVALLDFVRDVVRMSAGTNSLKVFKKDCTDLVRRIVLLTHLFEEIREFNGVQFRPVHTSCSSSSSSSSSSSSSSSGSDSSPSPWLCDLVAALKDTKRLVFIASTFRSCSSSSEEVTRKILFQFQCVTLKLEKALGNLPYDRFDISEEVQEEVELVRAQLRRAAEKYGSLTAIPPSVVQSQLLKKNMDMLNLNNWADNFDVEENGVVDHEITVKFDEFPNCRGFTNNGVDQLIFEGLEKKLPSPSEACSDGQDDSTKKSGDQVKNSDGVSIPDDFLCPISLEIMRDPVIVSTGQTYERSYVQRWIDCGNTTCPKTQQKLQNLTLTPNYVLRSLITQWCVDHNIEQPTGLTNGKIKKCDGSYRDVCEEMAAIETLVRKLTSHSIAEQRASVTEIRSLSKRSTDNRMLIAEAGAIPNLVNLLTADDVLIQENAVTSILNLSIYENNKGLIMLAGAVPSIVQVLRVGSMEARENAAATLFSLSLADENRIIIGASGATPALVDLLETGSPRGKKDAATALFNLCIYQGNKGRAVRAGIIPALLRMLNVSGNSMVDEALTIMSVLASHQEAKVAMVKASTIPVLIDLLRTGLARNKENAAAILLALCKRDTDNLCCISRLGAKIPLTELSKSGTERAKRKAASLLEHLGKLQQL 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 266562 270117 + Cp4.1LG01g06310.1 Cpe01g00039 461352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00039 662 Gene3D - 364 460 IPR011989 -
Cpe01g00039 662 SMART arm_5 453 493 IPR000225 GO:0005515
Cpe01g00039 662 SMART arm_5 494 534 IPR000225 GO:0005515
Cpe01g00039 662 SMART arm_5 576 616 IPR000225 GO:0005515
Cpe01g00039 662 SMART arm_5 535 575 IPR000225 GO:0005515
Cpe01g00039 662 SMART arm_5 412 452 IPR000225 GO:0005515
Cpe01g00039 662 SMART Ubox_2 286 349 IPR003613 GO:0004842|GO:0016567
Cpe01g00039 662 Coils Coil 158 178 - -
Cpe01g00039 662 ProSiteProfiles U-box domain profile. 282 356 IPR003613 GO:0004842|GO:0016567
Cpe01g00039 662 SUPERFAMILY RING/U-box 277 357 - -
Cpe01g00039 662 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 464 506 IPR000225 GO:0005515
Cpe01g00039 662 CDD RING-Ubox_PUB 287 329 IPR045210 -
Cpe01g00039 662 Gene3D - 559 661 IPR011989 -
Cpe01g00039 662 MobiDBLite consensus disorder prediction 74 95 - -
Cpe01g00039 662 MobiDBLite consensus disorder prediction 255 281 - -
Cpe01g00039 662 Pfam Armadillo/beta-catenin-like repeat 495 533 IPR000225 GO:0005515
Cpe01g00039 662 Pfam Armadillo/beta-catenin-like repeat 413 451 IPR000225 GO:0005515
Cpe01g00039 662 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 356 IPR013083 -
Cpe01g00039 662 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 20 659 - -
Cpe01g00039 662 SUPERFAMILY ARM repeat 373 656 IPR016024 -
Cpe01g00039 662 PANTHER U BOX DOMAIN-CONTAINING 20 659 - -
Cpe01g00039 662 Gene3D - 461 558 IPR011989 -
Cpe01g00039 662 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 423 465 IPR000225 GO:0005515
Cpe01g00039 662 Pfam U-box domain 283 354 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00039 Cpe-Chr1:266562 Cpe13g00377 Cpe-Chr13:4077679 1.25E-177 dispersed
Cpe01g00039 Cpe-Chr1:266562 Cpe01g00910 Cpe-Chr1:5374541 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00039 - - cmax:111484365 1205.28