Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00045 ATGGAAGAGGAAAAGGTCAAGCTTCTTCTATATGAAGATTATTTACAATTTTATAAATATTACAAATCTCTTCCTCTGTTCCGTTGTCTGTATTTCGATTCTCTTCTCAAAATCTTCGACGACAAGGGGAAGTGTTCAAGAGCATGCGAAGATTTTGAAATGAGTAATCGGACAGGACTTCTTCGAATTCGCCTCTTGCGAGGCATCAATCTCGCCATTCGTGATGCTCCCACCCGCAGCAGCGATCCCTACGTCGTCATCTCCACCGCTAACCAGAAATTCAAATCTCGAGTGGTGAAAAAAAACTGCAATCCACAATGGAACGAGGAATTCACACTCTCAATTACGGACATCAACACACCAATCAAATTAGCAGTGTTCGACAAAGATCGGTTCACGAAAGACGACGGAATGGGGGATGCAGAGATCGACATAAAACCGTACATAGAGTGTTTGAATATGGGATTAGAGAGTCTGCCGAAGGGTTGTGTGGTGAAAAGGGTCCAACCAAGCAGATCAAACAACCTTGCAGATGAGAGCCCTTGCGTTTGGAACGATGGTAAGATCATCCAAGACATGACTCTCAGACTACAGAATGTTGAATGTGGTGAAATCGCGATTCAGATTCAGTTGTTCAATGCTTCTGGGATTAAAGGCATGAGAACCTACTCTTTATCCTGA 681 43.17 MEEEKVKLLLYEDYLQFYKYYKSLPLFRCLYFDSLLKIFDDKGKCSRACEDFEMSNRTGLLRIRLLRGINLAIRDAPTRSSDPYVVISTANQKFKSRVVKKNCNPQWNEEFTLSITDINTPIKLAVFDKDRFTKDDGMGDAEIDIKPYIECLNMGLESLPKGCVVKRVQPSRSNNLADESPCVWNDGKIIQDMTLRLQNVECGEIAIQIQLFNASGIKGMRTYSLS 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 297361 299241 + Cp4.1LG01g06090.1 Cpe01g00045 461358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00045 226 PRINTS C2 domain signature 77 89 IPR000008 -
Cpe01g00045 226 PRINTS C2 domain signature 101 114 IPR000008 -
Cpe01g00045 226 PRINTS C2 domain signature 122 130 IPR000008 -
Cpe01g00045 226 CDD C2_ArfGAP 59 203 - -
Cpe01g00045 226 Pfam C2 domain 60 147 IPR000008 -
Cpe01g00045 226 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 55 155 IPR035892 -
Cpe01g00045 226 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 54 218 IPR044562 -
Cpe01g00045 226 Gene3D C2 domain 44 214 IPR035892 -
Cpe01g00045 226 ProSiteProfiles C2 domain profile. 41 161 IPR000008 -
Cpe01g00045 226 SMART C2_3c 60 157 IPR000008 -
Cpe01g00045 226 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 10 54 218 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00045 Cpe-Chr1:297361 Cpe09g01112 Cpe-Chr9:9578261 3.29E-67 dispersed
Cpe01g00045 Cpe-Chr1:297361 Cpe01g01844 Cpe-Chr1:15729256 3.84E-79 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00045 - - csv:101205028 315.079