Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00056 ATGCTAACTAATGATTCCATTTTCTTCCCCACGAAAACGAAAGCTCCCTCTCGAGTCCCCCATCCTCTCTGTTTAAACGCACCGTTTCGTTCCCAAACCAAAGTTTACAGAGAAAGGCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCGATGGCTGAACTCTCGAATCTCTCCTCGAGCCCCAGTGAAGAAAGCGAGAAGAACGTGCTGCAGAAACACGTGGCGTTCTTCGATAGGAACCATGACGGCGTCGTTTATCCATGGGAAACCTTCAAAGGCTTCCGAGCGATCGGGGCGGGTTTGTTTCTGTCCTCCGTCAGTGCTGTTTTTATTAACATCGGACTCAGCTCCAAAACCCGACCCGGGAAATGTCCCAACTTTTTATTCCCAATTGTGATAAACAACATTCACCTTGCCAAACATGGAAGTGATTCAGGTGTATATGATTCCGAAGGAAGGTTCGTTACATTAAAATTTGAAGAAATTTTCAAAAAGCATGCACTAACGTATCCGGATGCCTTAACCGAAAAAGAGCTTAAAGCAATGCTGAAAGCAAATAGAGAGCCGAAGGACTACAAGGGATGGATTGGTGCATGGGCAGAGTGGACAGCTCTGTACATCCTTTGCAAAGACGATAATGGATTGCTTACAAAGCAAACGGTGAAGGGTGTTTACGATGGAAGCTTATTCCAACATATGGAGGAAGACAGAGTATCAAAGAAGAAGAAATGA 732 44.67 MLTNDSIFFPTKTKAPSRVPHPLCLNAPFRSQTKVYRERPSSSSSSSSSPMAELSNLSSSPSEESEKNVLQKHVAFFDRNHDGVVYPWETFKGFRAIGAGLFLSSVSAVFINIGLSSKTRPGKCPNFLFPIVINNIHLAKHGSDSGVYDSEGRFVTLKFEEIFKKHALTYPDALTEKELKAMLKANREPKDYKGWIGAWAEWTALYILCKDDNGLLTKQTVKGVYDGSLFQHMEEDRVSKKKK 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 344396 346108 - Cp4.1LG01g06030.1 Cpe01g00056 461369

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00056 243 Pfam Caleosin related protein 66 233 IPR007736 -
Cpe01g00056 243 MobiDBLite consensus disorder prediction 34 63 - -
Cpe01g00056 243 PANTHER INACTIVE PEROXYGENASE-LIKE PROTEIN-RELATED 51 243 - -
Cpe01g00056 243 PANTHER PEROXYGENASE 3-RELATED 51 243 IPR007736 -
Cpe01g00056 243 MobiDBLite consensus disorder prediction 35 63 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00056 K17991 PXG; peroxygenase [EC:1.11.2.3] - csv:101213829 320.087
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00056 Cpe-Chr1:344396 Cpe12g00122 Cpe-Chr12:771759 5.61E-57 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe01g00056 . 64 243 Pollen Coat Proteome AT1G23240 54.4 1.1e-55 213.8
Cpe01g00056 . 64 243 Pollen Coat Proteome AT1G23240 54.4 1.1e-55 213.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007695 2 1 0 0 3 1 2 1 1 0 1 1 2 1 1 2 1 2 1 1 1 1 2 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00056 Cpe_Chr01 FPKM 22.378046 24.540867 13.23166 13.210778 17.697704 16.266134 18.130987 16.003786 14.637949 17.799807