Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00078 ATGGAGACCTCGGCTTCCAATTCTGATCCTTATTCCAATTCTTCTTCACCCACAACTTCTCCTACCTCCTCCAGATTTGGGGTCTCGATCCCTTCGCTCAATTTCTTCCGTTCGCCTCTGTCCGTCATTTTGGATTACTCTGGAATTCTTCCCACTAGGGCTGTTCCTCATGAATCGGAACCTATAATCAACGGCTCTGCCACCCCTGATTTGCGGGTTTATTCTCAAAATCAGAATCACTTGATGACTACCACTTCTTCTTCTTCTTCTTCTTCTAGTAATAGTCCCACCTCCTCCTCCTCCGGTAATACCAGCCCCTCTGGGGAGGTTTCGATTAGGATTATTGGGTCTGGTGAGCAAGATCCTTCTCCGGCTCTGGTTGGACAAGCTGGCTATGAGCAAAATGGTGGACTTCCTGTTTCTGGGGATCAGCCGGAATCCCCTGATGAGGAACGAGTTCCTTTGGTGTCCACTGCTTCTTCGTCTATTCAATCTGGAAGCAGTCGTGTTTCAGAATCTGGAAATGGCGTGGAAGAGAGTGTTAATAGAGATTCGTCTTATCAGAGATACGATATCCAGCAGGTTGCCAGGTGGATTGAACAGATTCTTCCTTTCTCTTTGCTACTGCTGATAGTCTTTATCCGTCAGCATTTGGAAGGTTTTTTCATCACAATTTGTATATCAGCTGTTATGTATAAGTCGAACGATATTGTCAAGAAACAGACTGCTCTAAAGGGGGAGAGGAAAATTTCTGTCCTTGCTGGGACATCTATTGCATTTTTGGTTCATGTTATTGGAATTTACTGGTGGTGCCATAGTGATGATCTTCTACACCCGTTAGTCATGCTTCCACCAAAGACAGTACCACCATTTTGGCATGCCTTGTTCATAATCTTAGTTAACGATACGATGGCGAGGCAGGTTGCAATGGCTCTCAAATGTCTTCTTCTTATTTACTACAAGAATGGCAGAGGCCATAATTTTCGCCGGCAGGGTCAAATTTTAACTCTCATGGAATACACTCTTCTGTTGTATCGTGCATTATTACCGGCACCTGTATGGTACCGGTTCTTCTTGAACAAAGATCAAGGGAGCCTTTTTTCATCACTGACAACAGGATTGTATTTAACTTTCAAGCTAACGTCTGTTGTTGAGAAGATTCAATCATTCGTGGCTGCATTTAAGGCTCTATCACAAAAAGAAGTCCATTATGGATCATATGCCACATCAGAACAGGCAAGTATATACATACCTGTAAGTGCTGCGGGAGACCTCTGTGCTATTTGCCAGGAGAAGATGAATGCTCCAATCCTGTTACGCTGTAAGCACATCTTCTGTGAAGATTGTGTTTCTGAATGGTTTGAAAGAGAAAGAACTTGCCCTCTCTGCCGGGCGCTGGTAAAGCCAGCAGAACTCCGAACATTTGGCGACGGGTCGACCAGCTTACTCTTCCAGTTGTTTTAG 1464 44.47 METSASNSDPYSNSSSPTTSPTSSRFGVSIPSLNFFRSPLSVILDYSGILPTRAVPHESEPIINGSATPDLRVYSQNQNHLMTTTSSSSSSSSNSPTSSSSGNTSPSGEVSIRIIGSGEQDPSPALVGQAGYEQNGGLPVSGDQPESPDEERVPLVSTASSSIQSGSSRVSESGNGVEESVNRDSSYQRYDIQQVARWIEQILPFSLLLLIVFIRQHLEGFFITICISAVMYKSNDIVKKQTALKGERKISVLAGTSIAFLVHVIGIYWWCHSDDLLHPLVMLPPKTVPPFWHALFIILVNDTMARQVAMALKCLLLIYYKNGRGHNFRRQGQILTLMEYTLLLYRALLPAPVWYRFFLNKDQGSLFSSLTTGLYLTFKLTSVVEKIQSFVAAFKALSQKEVHYGSYATSEQASIYIPVSAAGDLCAICQEKMNAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPAELRTFGDGSTSLLFQLF 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 471537 477280 - Cp4.1LG01g05880.1 Cpe01g00078 461391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00078 487 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 402 473 IPR013083 -
Cpe01g00078 487 MobiDBLite consensus disorder prediction 1 28 - -
Cpe01g00078 487 CDD RING-HC_RNFT1_like 425 464 - -
Cpe01g00078 487 Pfam Zinc finger, C3HC4 type (RING finger) 424 467 - -
Cpe01g00078 487 SMART ring_2 426 463 IPR001841 -
Cpe01g00078 487 ProSiteProfiles Zinc finger RING-type profile. 426 464 IPR001841 -
Cpe01g00078 487 MobiDBLite consensus disorder prediction 81 111 - -
Cpe01g00078 487 ProSitePatterns Zinc finger RING-type signature. 441 450 IPR017907 -
Cpe01g00078 487 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 5 487 IPR044235 GO:0061630|GO:1904294
Cpe01g00078 487 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 487 - -
Cpe01g00078 487 SUPERFAMILY RING/U-box 420 469 - -
Cpe01g00078 487 MobiDBLite consensus disorder prediction 154 183 - -
Cpe01g00078 487 MobiDBLite consensus disorder prediction 81 183 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00078 Cpe-Chr1:471537 Cpe19g00170 Cpe-Chr19:1381119 0 dispersed
Cpe01g00078 Cpe-Chr1:471537 Cpe01g00957 Cpe-Chr1:5668922 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00078 - K22379 csv:101207430 785.408