Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00100 ATGGATGAAATCCAAACCCCATTTGATTCCAACTCTTGTTGGAAATACCCACTTCGAGATTTTAGTGTTTTGTTGTCGGAAACTGCCGATTGGCTCTGTTTTCCAGGGAAGAATGAGAAGAAACGGATGTTTTCGAGGAAAACCCCCCATGGGTTTGTTTCTTCTCTTCATTTTGGATTAGTTTTGTTCCTTTTTGTGGTCAGTTTTGTCTGTGTTCAGCCTGTTTTGAGCCAGGATTGGGACGGCGTGGTTGTGACTCAGGCTGATTTTCAATCCCTTCAGGCATTCAAGCAAGAACTTGATGATCCTAAAGGGTTCTTGAAGAGTTGGAATGATAGTGGATTTGGTGCTTGTTCTGGTGGTTGGGTTGGGATTAAATGCGCCAAGGGACAGGTTATTGTGATACAGCTTCCATGGAAGGGATTAGGAGGTCGAATCACTGAGAAGATTGGCCAACTTCAGGCCCTTAGGAAGCTCAGTTTACATGACAACTTCATTGCTGGATCCATCCCTTCTTCATTGGGGCTTCTTCCAAATCTTAGAGGAGTTCAGTTGTTCAATAATCGATTTTCGGGGTCGCTCCCTCCCTCGTTGGGGCGTTGTCCTCTGCTTCAAACTCTTCACATTAGTAACAATTTGCTCACCGGAACAATCCCATCTAGTTTGGCTAACTCCACCAAACTCTATTGGCTTAACTTGAGCTATAACTCGTTTTCCGGTCCGATCCCGACGAGTCTCACTCGATCGGTGTCCCTTACTTTCCTCGCTCTTCAACACAACAATCTCTCAGGCAGCATTCCCGACTCGTGGGGAAGCGATGCCACAAACCAGGTGTTTCAGCTCAAGTCTTTGACTCTTGATGACAACCTCCTCTCAGGTACCATACCAACTTCTTTAAGCAAGTTAAGTAAGGTTCAAGTGGTTTCCCTTAGCCACAATAGGCTAAATGGTGGCCTTCCTGATGAACTTAGTAGGCTTTCTTTGCTCAAAACTTTGGATGTTTCTAATAATTTCCTTAATGGAAGCATACCCCAAAGTTTTGATGGATTGAGAAATCTGTCTGTTCTCAACTTGAGTAGAAACAGATTCAATGGTCATATACCTTCAACTTTGGGGAACATTTCAACACTTACTCAACTTGATCTATCTCAGAACAATCTAAGTGGAGAAATCCCAGCTTCTCTTGCTGATTTGCAAGCTCTTCAATCCTTAAACGTCTCGTATAACAACCTTTCGGGTTCGGTACCGGTGGCCCTTGCCGAAAAATTCAATGCGAGTTCCTTTGTTGGGAACATTCAGCTCTGTGGGTTCAGTGGTGCGATTCAGTGCCTGTCCCCTGCCCCTTCTCAAGAAGTTCCTGCTCCTCCGCTGGAAAGTTCGACATCCCGACATCGGAAATTAAGTACTAAAGATATAATCCTCATAGCAGCAGGATCCCTCCTTGTAGTATTGGTTATAGTTTTCTTTGTACTGCTGTGCTGCTTGATAAGGAAAAGAGCTGCTTCGAAAGAAAAGGATGGCGGTGAGGCAGCAGCAGCTGCGGCTGTGAGGACCGAGAAGGGTGTCCCTCCGACGAGCAGTGAAGTTGAAGCGGGAGGGGATGCTGGAGGAAAGCTCGTCCATTTCGAGGGGCAAACGGTGTTCACAGCAGATGATCTTTTGTGTGCAACAGCAGAAATAATGGGAAAGAGTACTTATGGGACTGTTTACAAGGCTACATTGGAGGATGGAAGTCAAGTTGCAGTAAAGAGATTGAGAGAGAAGATCACTAAGAGCCAGAAGGAATTTGAAGCAGAGGTCAATATACTTGGAAAGATCAGGCATCCAAATCTTCTAGCTTTGAGGGCTTATTACTTGGGACCTAAAGGAGAAAAGCTTCTTGTTTTCGATTACATGCCGAACGGGAGCCTCGCAACGTTCCTGCACGAGCTTTCAAAGCTGAAGAAAGCGAATACGAAAACTGACATTTACAGCCTTGGAGTGATCATATTGGAACTCCTGACTGGAAAGTCCCCCGGTGAAGCCATGAACGGAGTCGATTTGCCGCAATGGGTTGCATCAATTGTCAAAGAGGAGTGGACCAATGAAGTTTTCGATATGGAACTGATGAAGGATGCCTCTACCATTGGAGATGAGTTGCTGAACACGCTAAAACTCGCTTTGCATTGCGTCGATCCATCACCGTCGGCAAGACCAGAAGTTCAACAAGTTCTACAACAACTGGAGGAGATTAGGCCAGAAACTGCTCCCAGTTCTGGGGACGACGGAGCTGGAGGAGGAGGAGGACCCCCTTCAACAAGTGAGTGA 2307 45.9 MDEIQTPFDSNSCWKYPLRDFSVLLSETADWLCFPGKNEKKRMFSRKTPHGFVSSLHFGLVLFLFVVSFVCVQPVLSQDWDGVVVTQADFQSLQAFKQELDDPKGFLKSWNDSGFGACSGGWVGIKCAKGQVIVIQLPWKGLGGRITEKIGQLQALRKLSLHDNFIAGSIPSSLGLLPNLRGVQLFNNRFSGSLPPSLGRCPLLQTLHISNNLLTGTIPSSLANSTKLYWLNLSYNSFSGPIPTSLTRSVSLTFLALQHNNLSGSIPDSWGSDATNQVFQLKSLTLDDNLLSGTIPTSLSKLSKVQVVSLSHNRLNGGLPDELSRLSLLKTLDVSNNFLNGSIPQSFDGLRNLSVLNLSRNRFNGHIPSTLGNISTLTQLDLSQNNLSGEIPASLADLQALQSLNVSYNNLSGSVPVALAEKFNASSFVGNIQLCGFSGAIQCLSPAPSQEVPAPPLESSTSRHRKLSTKDIILIAAGSLLVVLVIVFFVLLCCLIRKRAASKEKDGGEAAAAAAVRTEKGVPPTSSEVEAGGDAGGKLVHFEGQTVFTADDLLCATAEIMGKSTYGTVYKATLEDGSQVAVKRLREKITKSQKEFEAEVNILGKIRHPNLLALRAYYLGPKGEKLLVFDYMPNGSLATFLHELSKLKKANTKTDIYSLGVIILELLTGKSPGEAMNGVDLPQWVASIVKEEWTNEVFDMELMKDASTIGDELLNTLKLALHCVDPSPSARPEVQQVLQQLEEIRPETAPSSGDDGAGGGGGPPSTSE 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 585262 588170 + Cp4.1LG01g05770.1 Cpe01g00100 461413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00100 768 ProSiteProfiles Protein kinase domain profile. 555 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g00100 768 SUPERFAMILY L domain-like 126 419 - -
Cpe01g00100 768 Pfam Leucine rich repeat N-terminal domain 88 127 IPR013210 -
Cpe01g00100 768 Gene3D Transferase(Phosphotransferase) domain 1 629 754 - -
Cpe01g00100 768 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 643 749 - -
Cpe01g00100 768 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 43 358 - -
Cpe01g00100 768 SMART LRR_typ_2 177 201 IPR003591 -
Cpe01g00100 768 SMART LRR_typ_2 350 374 IPR003591 -
Cpe01g00100 768 SMART LRR_typ_2 326 349 IPR003591 -
Cpe01g00100 768 SMART LRR_typ_2 153 176 IPR003591 -
Cpe01g00100 768 SMART LRR_typ_2 398 421 IPR003591 -
Cpe01g00100 768 Gene3D Ribonuclease Inhibitor 88 199 IPR032675 -
Cpe01g00100 768 MobiDBLite consensus disorder prediction 515 534 - -
Cpe01g00100 768 Pfam Leucine rich repeat 203 262 IPR001611 GO:0005515
Cpe01g00100 768 Pfam Leucine rich repeat 280 337 IPR001611 GO:0005515
Cpe01g00100 768 Pfam Leucine rich repeat 351 411 IPR001611 GO:0005515
Cpe01g00100 768 MobiDBLite consensus disorder prediction 744 768 - -
Cpe01g00100 768 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 350 643 - -
Cpe01g00100 768 Pfam Protein tyrosine and serine/threonine kinase 558 644 IPR001245 GO:0004672|GO:0006468
Cpe01g00100 768 Gene3D Phosphorylase Kinase; domain 1 561 628 - -
Cpe01g00100 768 Gene3D Ribonuclease Inhibitor 200 278 IPR032675 -
Cpe01g00100 768 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 350 643 - -
Cpe01g00100 768 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 43 358 - -
Cpe01g00100 768 Gene3D Ribonuclease Inhibitor 280 444 IPR032675 -
Cpe01g00100 768 SUPERFAMILY Protein kinase-like (PK-like) 559 745 IPR011009 -
Cpe01g00100 768 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 643 749 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g00100 Cpe01g01012 CCT
Cpe01g01012 Cpe01g00100 ECH
Cpe01g00100 Cpe01g01012 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00100 Cpe-Chr1:585262 Cpe08g01239 Cpe-Chr8:8981149 6.20E-14 dispersed
Cpe16g00119 Cpe-Chr16:2583288 Cpe01g00100 Cpe-Chr1:585262 1.97E-11 dispersed
Cpe17g00828 Cpe-Chr17:6439629 Cpe01g00100 Cpe-Chr1:585262 1.61E-36 dispersed
Cpe17g00980 Cpe-Chr17:7470080 Cpe01g00100 Cpe-Chr1:585262 3.04E-58 dispersed
Cpe01g00100 Cpe-Chr1:585262 Cpe01g01012 Cpe-Chr1:5980111 0 wgd
Cpe01g00100 Cpe-Chr1:585262 Cpe03g00034 Cpe-Chr3:178075 1.79E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62103 PF07714 PK_Tyr_Ser-Thr 7.40E-14 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00100 - - csv:101214895 1002.66