Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00128 ATGTGTAGTGGCTCAAAGAATAAAGTTACTTCCTCGAATTCGGCCATGGACGCCAAGTTTCAGAAGCTTAACCATGGTTCTTTCTTCTCTGCGAGTTCAATTTTGCTTGAACTATCGGCTTCTGATGATGTAGAAGGGTTCAAGAGAGAGGTTGAAGAAAATGGTTTGGATGTTAATGAACCAAGCTGCTGGTATGGCAGAGGAATTGGATCGAAGAAGATGGCTTTTGAAAAAAGAACTCCATTGATGATTGCTGCCATGTTTGGAAGCTCCAAGGTTGTCAAGCACTTAATTGGGACAGGCAAGGTTGATGTCAACAGGGCTTGTGGTTCAGATATGGTCACTGCTCTTCACTGTGCCACTGCTGGTGGCTCTGGTTCTTCCCTTGAGACCATCAAGCTCTTGCTCAACGGATCGGCCGATGTTGATTGTGTCGATGCTTATGGGAGAAAGCCTGTTGATTTGATTGTTTCAGCTTGTAGGATGGTGAGTAATTCAGGAAGAAAGGCTATGGAGATGTTGTTGAGAGGAGATGGTATGGCTGGGGAAGGTGATTTGAGCCTTTACCTTGAAGAAGACCAGCAGAAGATTATAGCTTCCCCGTCTGCAAAAGAAGGAAGTGACAAGAAAGAGTATCCGGTCGATGTATCGCTGCCTGATATCAACAGCGGGATGTACGGTACCGATGATTTCAGGATGTATACCTTCAAAGTGAAGCCTTGTTCGAGGGCATATTCGCACGATTGGACCGAGTGTCCTTTCGTTCATCCTGGTGAGAACGCTAGGCGTAGAGACCCCAAGAAGTACCCATATAGCTGCGTTCCGTGCCCCGAATTCCGTAAGGGGGCTTGCCCAAAGGGGGATTCCTGTGAGTATGCACATGGTGTCTTTGAGTCCTGGCTTCACCCTGCTCAATACCGAACCCGACTCTGCAAGGATGAGACTGGCTGCAACAGGAAAGTTTGCTTCTTTGCTCACAAACCTGAAGATTTGCGCCCTGTATATGCTTCAACAGGCTCAGGCATGCCTTCACCCAGGTCTCTTTCGAGCAGCGCAGCGGATATGTCTACCATGAGCACATTGACTCTTGGTTCATCATCGTTGTCATTACCGACAACTTCAACACCTCCCATGTCTCCCTTAGCATCAGTGTCTTCCCCTACGAATGGAAACTTGTGGCAGAACAAGATTAACCTTACCCCTCCTGCTCTGCAACTCTCTGGTAGTCGGTTAAAGACCACCTTGAGTGCAAGAGATTTGGATTTTGAGATGGAATTGCTCGGGTTGGAAAAGAACGCGAGCCAGCTACAACATCAGCAGCAGTTGATCGACGAGATATCTCGACTTTCCACTCCTAATTACTGGAGTGGAGATGTAAGCAGGAGTGCCGAGTTGAAGCCGTCAAACCTTGATGACATGTTTGGATCATTAGATTCTTCCTTGTTGTCTCAGTTGCAGGGTGGCTCGCTAAAAACCTCTCAGGTTCAATCTCCGACCGGGATGCAGATGCGCCAAAATATGAACCAACTCCGTGCAAGTTACCCGGCTAACTTAGCATCCTCACCTGTAAAGAAGCCCTCCTCTTTTGGCTTTGATTCATCAAGTGCAGTGGCAGCTGCTGTGATGAACTCAAGGTCTGCTGCCTTTGCAAAACGAAGCCAAAGTTTCATCGATCGAGCTGCAGTGCCTCGTCTTCCCGGGTTTACCACAGCTGCAAACTCTGCAGCTACAATGTCTTCCCATCTCTCAGGTTGGAACTCACCCGATGGCAAACTAGACTGGGGAGTACACAGCAACAATCTCAACAAACTCCAGAAATCTGCTTCGTTTGCCATCCGAAACAATGGCATAGGAGGTCCCACAACCTTTGCACCATCCGCAGGGGAGCCCGACGTCTCTTGGGTTAACTCCTTGGTTAAAGACGTTCCCTCCGACAGCTTCGAGCAGTTCGGTGCGAAGAAGCGGCAATACAACCTCAAAAGAGAAATCAACGAGATGCTCCCATCCTGGATGGAGCAGCAGTTGTATGCAGAGCAGGAGCAGATAGTGGCATAA 2055 48.42 MCSGSKNKVTSSNSAMDAKFQKLNHGSFFSASSILLELSASDDVEGFKREVEENGLDVNEPSCWYGRGIGSKKMAFEKRTPLMIAAMFGSSKVVKHLIGTGKVDVNRACGSDMVTALHCATAGGSGSSLETIKLLLNGSADVDCVDAYGRKPVDLIVSACRMVSNSGRKAMEMLLRGDGMAGEGDLSLYLEEDQQKIIASPSAKEGSDKKEYPVDVSLPDINSGMYGTDDFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPKKYPYSCVPCPEFRKGACPKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCNRKVCFFAHKPEDLRPVYASTGSGMPSPRSLSSSAADMSTMSTLTLGSSSLSLPTTSTPPMSPLASVSSPTNGNLWQNKINLTPPALQLSGSRLKTTLSARDLDFEMELLGLEKNASQLQHQQQLIDEISRLSTPNYWSGDVSRSAELKPSNLDDMFGSLDSSLLSQLQGGSLKTSQVQSPTGMQMRQNMNQLRASYPANLASSPVKKPSSFGFDSSSAVAAAVMNSRSAAFAKRSQSFIDRAAVPRLPGFTTAANSAATMSSHLSGWNSPDGKLDWGVHSNNLNKLQKSASFAIRNNGIGGPTTFAPSAGEPDVSWVNSLVKDVPSDSFEQFGAKKRQYNLKREINEMLPSWMEQQLYAEQEQIVA 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 738386 740440 - Cp4.1LG01g05350.1 Cpe01g00128 461441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00128 684 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 21 682 - -
Cpe01g00128 684 ProSiteProfiles Zinc finger C3H1-type profile. 270 297 IPR000571 GO:0046872
Cpe01g00128 684 Gene3D - 5 191 IPR036770 -
Cpe01g00128 684 ProSiteProfiles Ankyrin repeat profile. 112 147 IPR002110 GO:0005515
Cpe01g00128 684 MobiDBLite consensus disorder prediction 334 386 - -
Cpe01g00128 684 MobiDBLite consensus disorder prediction 340 386 - -
Cpe01g00128 684 Pfam Ankyrin repeats (3 copies) 79 144 IPR002110 GO:0005515
Cpe01g00128 684 Gene3D - 271 333 - -
Cpe01g00128 684 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 275 295 IPR000571 GO:0046872
Cpe01g00128 684 SMART ANK_2a 112 144 IPR002110 GO:0005515
Cpe01g00128 684 SMART ANK_2a 77 107 IPR002110 GO:0005515
Cpe01g00128 684 SMART c3hfinal6 270 296 IPR000571 GO:0046872
Cpe01g00128 684 SMART c3hfinal6 305 328 IPR000571 GO:0046872
Cpe01g00128 684 PANTHER UNKEMPT FAMILY MEMBER 21 682 IPR045234 -
Cpe01g00128 684 SUPERFAMILY Ankyrin repeat 35 154 IPR036770 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g00128 Cpe01g01032 CCT
Cpe01g01032 Cpe01g00128 ECH
Cpe01g00128 Cpe01g01032 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00128 Cpe-Chr1:738386 Cpe08g01381 Cpe-Chr8:9920910 7.54E-153 dispersed
Cpe01g00128 Cpe-Chr1:738386 Cpe01g01032 Cpe-Chr1:6109429 0 wgd
Cpe01g00128 Cpe-Chr1:738386 Cpe05g00970 Cpe-Chr5:6326093 5.45E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48722 PF12796 Ank_2 1.50E-07 CL0465 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00128 - - cmax:111490802 1243.02