Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00130 ATGGCTTCAATCTCTTTCAGCCCTCGCACCGTCGAAGACATCTTCAAGGATTACAGCGCTCGACGCACTGGCCTCGTGCGAGCCCTTACTTATGATGTCGATGACTTCTACTCGCTTTGCGATCCTGAGAAGGAGAATTTGTGTTTGTACGGACACCCGAACGAGTCTTGGGAGGTGACTTTGCCTGCCGAGGAGGTGCCATCCGAGCTTCCTGAGCCTGCGTTGGGGATCAATTTTGCTAGAGATGGGATGAAGCGCAGAGATTGGCTTTCGTTGGTGGCCGTGCACAGTGATTGTTGGTTGCTTTCTGTGGCGTTTTACCTCGGTGCTCGACTCAACTGCAATGAGCGGAAGCGACTATTTAGTATGATTAATGATCTACCCACTCTATTTGAAGTTGCGTCTGGAAGGAAAGCTGTTAAAGACAAACCCAGTATGGATAGTGGAAGTAAATCCAGAAACAGCTCAAAGAGGTCACTAGATGGGTCAATTAGAATCAGCAATCCAAAGATAATCGATGAGAGTTATGGAGAGGATGAGGATGAGCATGGTGATACTCTGTGTGGAAGCTGTGGGGGGAACTACAACGCAGATGAGTTTTGGATTGGATGCGACATCTGTGAAAGGTGGTTCCATGGAAAATGTGTGCGGATAACACCAGCCAAGGCAGACAATATCAAGCAGTATAAATGCCCCTCTTGCAGCACAAAGAAAGGAAGACCATAG 726 48.07 MASISFSPRTVEDIFKDYSARRTGLVRALTYDVDDFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAFYLGARLNCNERKRLFSMINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSSKRSLDGSIRISNPKIIDESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKADNIKQYKCPSCSTKKGRP 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 750940 759344 - Cp4.1LG01g05310.1 Cpe01g00130 461443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00130 241 MobiDBLite consensus disorder prediction 141 161 - -
Cpe01g00130 241 ProSitePatterns Zinc finger PHD-type signature. 188 234 IPR019786 -
Cpe01g00130 241 ProSiteProfiles Zinc finger PHD-type profile. 185 237 IPR019787 -
Cpe01g00130 241 Pfam Alfin 10 135 IPR021998 GO:0006355|GO:0042393
Cpe01g00130 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 236 IPR013083 -
Cpe01g00130 241 PANTHER CPG BINDING PROTEIN 1 240 IPR045104 GO:0006355|GO:0042393
Cpe01g00130 241 SUPERFAMILY FYVE/PHD zinc finger 176 239 IPR011011 -
Cpe01g00130 241 CDD PHD_AL_plant 187 237 IPR044104 -
Cpe01g00130 241 Pfam PHD-finger 188 236 IPR019787 -
Cpe01g00130 241 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 2 1 240 - -
Cpe01g00130 241 SMART PHD_3 187 235 IPR001965 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g00130 Cpe01g01035 CCT
Cpe01g01035 Cpe01g00130 ECH
Cpe01g00130 Cpe01g01035 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00130 Cpe-Chr1:750940 Cpe17g00469 Cpe-Chr17:3498302 6.20E-103 dispersed
Cpe01g00130 Cpe-Chr1:750940 Cpe01g01035 Cpe-Chr1:6128234 1.44E-146 wgd
Cpe01g00130 Cpe-Chr1:750940 Cpe03g00051 Cpe-Chr3:277286 8.04E-126 wgd
Cpe01g00130 Cpe-Chr1:750940 Cpe08g01225 Cpe-Chr8:8916056 2.46E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48723 PF12165 Alfin 1.10E-66 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00130 - - csv:101211934 464.536