Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe01g00138 | ATGGTTTCCATATATCGTGATCGGACGTCGGAGTTTCGGTCGCTGTCGGATACGTTGAGGAAGATTGCCGGAGTCACAGCCGACGTCCATCCAGTTCAAAATGAACCATCGGCGTCAGTACTCTCCGGATCACCGGGCTTTGCACGGTCTGAATTCAGCAGGAAGGCATCTCTTATCGGCTGGGGTATCCAAGAAGCCTCTCAGAAGATCGCGAGGCTTGCTCAGTTAGCAAAAAGATCATCGATGTTTGATGATCCAATCAGGGAAATCCAGGAAATGACTGCTTTGATTAAGAATGATATTACATCATTGAATGTAGCTATCTCAGATTTGCAAGCCATCCAAACGATGGAGATAGCAGAGGGGAATTATTCTGAGGACAGAGTGGTTCATTCAACCGCTGTCTGTGATGACCTTAAGAGTAAACTTATGGGAGCTACAAAACAACTTCAAGATGTGTTAAATGCAAGAACAGAGAATATCAAGGCCAATGAGAGCCGGAGACAAATATTCTCTGCAAATGCAACCAGAGAAAGTCCTTTTCAAAATCAAGCTAAAACTGTAACTCAACCTCCACCTTGGTTAAGTAATACATCTGAAAGTGATCAATCATCCTTACGAAGGCTAGCTGTGGAGGTCACCCCATCACAGCAAATGGAGATGTCAATGTTACAGCAGGTGGTTCCTAGGCAGGAAAACTATTTACAAAGTCGGGCAGGTGCTCTCCACAATGTGGAATCCACCATCTCAGAACTGGGTGGAATTTTTACACATCTTGCCACAATGGTAGCACATCAAGGAGAACTTGCTATCAGGATTGATGACAACATGGATGAATCAATGGCGAATGTAGAAGGTGCTCGAACCTCTCTCTTTAGGCATCTTAACCAGATATCATCAAACAGATGGCTTCTTATCAAAATATTTGTTATTCTAATAATTTTCTTGATGCTCTTTATTTTCTTGGCATAA | 972 | 43.0 | MVSIYRDRTSEFRSLSDTLRKIAGVTADVHPVQNEPSASVLSGSPGFARSEFSRKASLIGWGIQEASQKIARLAQLAKRSSMFDDPIREIQEMTALIKNDITSLNVAISDLQAIQTMEIAEGNYSEDRVVHSTAVCDDLKSKLMGATKQLQDVLNARTENIKANESRRQIFSANATRESPFQNQAKTVTQPPPWLSNTSESDQSSLRRLAVEVTPSQQMEMSMLQQVVPRQENYLQSRAGALHNVESTISELGGIFTHLATMVAHQGELAIRIDDNMDESMANVEGARTSLFRHLNQISSNRWLLIKIFVILIIFLMLFIFLA | 323 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 799506 | 802415 | - | Cp4.1LG01g05100.1 | Cpe01g00138 | 461451 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe01g00138 | 323 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 232 | 294 | IPR000727 | - | |
Cpe01g00138 | 323 | Pfam | SNARE domain | 269 | 320 | IPR000727 | - | |
Cpe01g00138 | 323 | MobiDBLite | consensus disorder prediction | 173 | 202 | - | - | |
Cpe01g00138 | 323 | Coils | Coil | 136 | 156 | - | - | |
Cpe01g00138 | 323 | PANTHER | SYNTAXIN | 4 | 322 | IPR045242 | - | |
Cpe01g00138 | 323 | SMART | tSNARE_6 | 227 | 294 | IPR000727 | - | |
Cpe01g00138 | 323 | CDD | SNARE_syntaxin5 | 235 | 320 | - | - | |
Cpe01g00138 | 323 | ProSitePatterns | Syntaxin / epimorphin family signature. | 238 | 277 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
Cpe01g00138 | 323 | Gene3D | - | 48 | 287 | - | - | |
Cpe01g00138 | 323 | Pfam | Syntaxin-5 N-terminal, Sly1p-binding domain | 6 | 21 | IPR021538 | - | |
Cpe01g00138 | 323 | PANTHER | SYNTAXIN-31 | 4 | 322 | - | - | |
Cpe01g00138 | 323 | SUPERFAMILY | t-snare proteins | 48 | 287 | IPR010989 | GO:0016020|GO:0016192 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe01g00138 | Cpe01g01046 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g00138 | Cpe-Chr1:799506 | Cpe11g00567 | Cpe-Chr11:3361050 | 4.76E-84 | dispersed | |
Cpe01g00138 | Cpe-Chr1:799506 | Cpe01g01046 | Cpe-Chr1:6186927 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe01g00138 | K08490 | - | csv:101213786 | 473.011 |