Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00169 ATGGCAAGTCGATGGTGGGCTGAAAATATACCCACCACCACAGATAGCAGCACCACCAACCCTTATTCGACTCCATTAAAGCAAAGCTTAGAAGCTGCGGATGAAGAAAACAACTCCGGCAGCTATGAGAGAGCTGAACCAGGCACCGGCTCCACCACGCGCCGCCCACGTGGTCGGCCGCCGGGATCCAAAAACAAGATGAAGCCTCCGGTGGTAGTCACCAAGGAGAGCCCCGATGCTCTCCGGAGCCACGTTTTAGAAATCGGCAGCGGCAGCGACATCGTCGAAAGCATCTCGAACTTCGCTCAACGTCGCCAGCGAGGGGTTTCTGTCCTCAGTGGAAATGGGGTTGTCGCCAATGTCACTCTAAGGCATCCGGCCGCCCCTGGCAACGTTATTACTCTACAGGGACGGTTTGATATATTGTCGCTCTCCGGTGCCTTTTTGCCTTCCCCTGCTCCACCAGGGGCTACCGGACTAACAGTCTACTTGGCTGGCGGGCAGGGGCAGGTAGTTGGTGGCATTGTCGTCGGTGCTCTCATCGCAACCGGTCCGGTTATTGTCATCGCTGCTACCTTCACCAATGCCACATACGAGCGGCTACCGCTTGAGGATGAGGAGGCAGCTGCCGGAGACAAGTCCGGAAATAGCCAAAACAATTCAACTTCTCAGAGCATGGGGGATCAGCAACAGCAGCAGCCTTCAATGGGAAATTACAATATGACTTCAAATTTGGTGCCAAATGGTCAGGTTTCTTCTCATGATGTGTTTTGGAGTCCTCCTCGAGCCCCACCTCCATTCTAA 804 54.48 MASRWWAENIPTTTDSSTTNPYSTPLKQSLEAADEENNSGSYERAEPGTGSTTRRPRGRPPGSKNKMKPPVVVTKESPDALRSHVLEIGSGSDIVESISNFAQRRQRGVSVLSGNGVVANVTLRHPAAPGNVITLQGRFDILSLSGAFLPSPAPPGATGLTVYLAGGQGQVVGGIVVGALIATGPVIVIAATFTNATYERLPLEDEEAAAGDKSGNSQNNSTSQSMGDQQQQQPSMGNYNMTSNLVPNGQVSSHDVFWSPPRAPPPF 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 954469 955272 + Cp4.1LG01g05040.1 Cpe01g00169 461482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00169 267 Pfam Plants and Prokaryotes Conserved (PCC) domain 82 195 IPR005175 -
Cpe01g00169 267 SUPERFAMILY AF0104/ALDC/Ptd012-like 79 208 - -
Cpe01g00169 267 MobiDBLite consensus disorder prediction 207 267 - -
Cpe01g00169 267 Gene3D - 81 210 - -
Cpe01g00169 267 MobiDBLite consensus disorder prediction 1 48 - -
Cpe01g00169 267 ProSiteProfiles PPC domain profile profile. 78 216 IPR005175 -
Cpe01g00169 267 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 20 266 - -
Cpe01g00169 267 MobiDBLite consensus disorder prediction 1 76 - -
Cpe01g00169 267 PIRSF ESCAROLA 8 265 IPR014476 GO:0003680
Cpe01g00169 267 MobiDBLite consensus disorder prediction 212 255 - -
Cpe01g00169 267 CDD DUF296 82 165 IPR005175 -
Cpe01g00169 267 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 20 266 IPR014476 GO:0003680
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g00169 Cpe01g01079 CCT
Cpe01g00169 Cpe01g02551 CCT
Cpe01g00169 Cpe13g01102 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00169 Cpe-Chr1:954469 Cpe03g01502 Cpe-Chr3:11828854 4.75E-73 dispersed
Cpe11g01009 Cpe-Chr11:8519080 Cpe01g00169 Cpe-Chr1:954469 4.40E-44 dispersed
Cpe17g00291 Cpe-Chr17:1974212 Cpe01g00169 Cpe-Chr1:954469 3.08E-67 dispersed
Cpe01g00169 Cpe-Chr1:954469 Cpe01g01079 Cpe-Chr1:6366461 3.12E-169 wgd
Cpe01g00169 Cpe-Chr1:954469 Cpe01g02551 Cpe-Chr1:20834550 1.03E-65 wgd
Cpe01g00169 Cpe-Chr1:954469 Cpe13g01102 Cpe-Chr13:8883391 2.13E-67 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00169 - - csv:101217530 436.802