Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00170 ATGACAGGGCTTACCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTGCGGTGCCTGCAAGTTTCTTAGACGAAAATGTAGTAATCACTGTGTTTTTGCTCCTTTCTTCACCTATGATGAAGCTACTTCCCACTTTGCTGCTGTTCATAAAGTGTTTGGTGCTAGTAATGTCTCCAAGCTTCTCTTGCACCTCCCCATGCACATCCGAAGCCACGCTGCGATTACTGTTGCTTATGAAGCTCTCGAGCGCATGCGAGATCCTACTTATGGTTGTGTTGCACATATCTTCGCGTTGCAACAAGAGATCGTGAGTTTGCAAGAAGAGATAGATATGTTAGGGAGCCAAATTGCCAACTTCACTGCCGATATGGACAACGTTGCAGTGGTCGAGAATCCATGTATAGAGCTTCAAGTCTCGAAACAGTTGAATGATTTGGTGATGAACACAAATGATTATCAAAACGAGTTGCTCTCTCAACTACCGACTTTTGATGAAGTCGAAACTAATGATGCTCAAATGATATCTCCATTGTTTTGTATCGGGGAAGAAGAAGGGTTTTTCGGGTGCAACCCAAATAACGCTATGGAGAATTCAGCCTTTGATGTATCCGTTGATGAAAACTTTGCTTATCTATGGTAG 639 42.57 MTGLTSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIVSLQEEIDMLGSQIANFTADMDNVAVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLPTFDEVETNDAQMISPLFCIGEEEGFFGCNPNNAMENSAFDVSVDENFAYLW 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 957353 958165 - Cp4.1LG01g04910.1 Cpe01g00170 461483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00170 212 Coils Coil 95 115 - -
Cpe01g00170 212 Pfam Lateral organ boundaries (LOB) domain 15 112 IPR004883 -
Cpe01g00170 212 PANTHER LOB DOMAIN CONTAINING PROTEIN 12 160 - -
Cpe01g00170 212 PANTHER LOB DOMAIN-CONTAINING PROTEIN 33 12 160 - -
Cpe01g00170 212 ProSiteProfiles LOB domain profile. 14 116 IPR004883 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g00170 Cpe01g01080 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00170 Cpe-Chr1:957353 Cpe17g00315 Cpe-Chr17:2137602 9.37E-48 dispersed
Cpe01g00170 Cpe-Chr1:957353 Cpe01g01080 Cpe-Chr1:6370029 9.94E-89 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48727 PF03195 LOB 1.30E-32 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00170 K13945 - csv:101204875 291.967