Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00178 ATGGCTGCTATTCCTATTTCTCTTCTCGCCATTATTGTCTCCTTGCTCTCTGTCGACGCTAGGATCCCTGGAGTTTACTCTGGCGGCCAGTGGCAGAGCGCTCATGCTACTTTTTATGGCGGCAGTGATGCCTCTGGAACCATGGGTGGTGCTTGTGGTTACGGAAACTTGTACAGCCAAGGTTATGGCGTGAATACCGCGGCGTTGAGCACTGCTTTGTTCAACAACGGTTTAAGCTGCGGAGCTTGCTTCGAGCTCAAGTGCGCTAACGATCCGCAGTGGTGCCATGCCGGCAGTCCGTCGATTTTCATCACCGCCACAAATTTTTGTCCTCCTAACTACGCTCTTCCGAGCGACAATGGAGGCTGGTGCAACCCTCCCCGACCTCATTTCGACCTCGCAATGCCTATGTTCCTCAAGATCGCCGAGTACAGAGCCGGAATCGTTCCAGTCTCTTATCGAAGTCATTATTAA 474 52.32 MAAIPISLLAIIVSLLSVDARIPGVYSGGQWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCANDPQWCHAGSPSIFITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRSHY 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1002796 1004259 + Cp4.1LG01g04870.1 Cpe01g00178 461491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00178 157 Pfam Lytic transglycolase 66 153 IPR009009 -
Cpe01g00178 157 PANTHER EXPANSIN-A4 8 154 - -
Cpe01g00178 157 SUPERFAMILY Barwin-like endoglucanases 30 155 IPR036908 -
Cpe01g00178 157 PANTHER EXPANSIN-A15 8 154 IPR002963 GO:0009664
Cpe01g00178 157 SMART dpbb_1 66 153 IPR007112 -
Cpe01g00178 157 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 154 IPR007112 -
Cpe01g00178 157 Gene3D - 19 156 IPR036908 -
Cpe01g00178 157 PRINTS Expansin signature 121 138 IPR002963 GO:0009664
Cpe01g00178 157 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Cpe01g00178 157 PRINTS Expansin signature 102 112 IPR002963 GO:0009664
Cpe01g00178 157 PRINTS Expansin signature 138 151 IPR002963 GO:0009664
Cpe01g00178 157 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Cpe01g00178 157 PRINTS Expansin/Lol pI family signature 146 157 IPR007118 GO:0005576
Cpe01g00178 157 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Cpe01g00178 157 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Cpe01g00178 157 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00178 Cpe-Chr1:1002796 Cpe01g02305 Cpe-Chr1:19451816 4.56E-90 dispersed
Cpe01g00178 Cpe-Chr1:1002796 Cpe01g01088 Cpe-Chr1:6418949 4.56E-69 wgd
Cpe01g00178 Cpe-Chr1:1002796 Cpe10g00890 Cpe-Chr10:5008797 4.81E-95 wgd
Cpe01g00178 Cpe-Chr1:1002796 Cpe16g00619 Cpe-Chr16:6736333 1.32E-95 wgd
Cpe01g00178 Cpe-Chr1:1002796 Cpe19g00348 Cpe-Chr19:3058720 7.06E-92 wgd
Cpe01g00178 Cpe-Chr1:1002796 Cpe02g01228 Cpe-Chr2:11088874 9.45E-98 wgd
Cpe01g00178 Cpe-Chr1:1002796 Cpe20g00823 Cpe-Chr20:7443824 2.12E-97 wgd
Cpe01g00178 Cpe-Chr1:1002796 Cpe05g00925 Cpe-Chr5:6080077 4.42E-96 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00178 - - csv:101218950 306.99