Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00211 ATGCACATCAAAGGATTCTTTGGCTTCTCCCACTCCTCTTCTTCCTTCCCCACCTCCGGCCGCCGGACTTCGCTGCCGTCGAGCTATGACCCTTCCCAATTGGCGGCCATGGAAGAGGCTATCACGAACTCGGAACCCATCATCATGAAATGGGACCCGGATTCCTCTGAGTTCAATAGAATTACCTTCCTCTTCCGCCACGGCCGAGCTGAATCCGATGAGTTTTTGAACTCCGTCAATGAGCTCCGGCGGACAATGGATTTTGTCATATCCGAGAATTCCACCTCCAATGTCCTTGTTCTAGCTCAAAAGCTGATGCAGGCTGCCATGAGACGACTCGAGAAGGAGTTCTACCAGATTTTGAGCGAGAATCGCCAGAATATCGACCCGGAATCCTTTTCTGGTAGATCTTCTGATAGGTCAACGGCCGACGGGGAAAGCAGAGGGGATTCTGTCGGCGACGTCGACAGAGTCTCGGCGGACTTGAAATCGATTGCTGATTGCATGATTGATTCTGGGTATGGGAAAGAGTGTGTTCAAATCTACAAAGTAATCCGAAAATCGATCGTCGATGAAACTCTGTATCGGCTCGAAACAGAGAAGTTCAAACTTTCGAGAATTCAGAGATGGAATTGGGATTCGGTGGAACATGTGATTAAGATTTGGATGAATTCGATCAAGATCGCCGTGAATACTCTGTTTCTTGGAGAGAAAATTCTCTGCGATCATGTTTTTTCGAGGTCGGAAAGAATCCGAGAATCCTGTTTTTCCGACATCACAAAAGATGGTGCAATCACGTTGTTTAGATTCCCGGAATTGGTCGCAAAGGGGAAGAAAGATTCCGACAAAATCTTTCTGTTAATGGAGCTTTACGAAGCGAGTTACGAAGTCTTGCCGGAAATCGAGGTAATATTCGACTCTGTTTCGACGTCCGCCATTAAAACGCAAGCTCAAACGTCAATGGTGAAGCTTGCGGATTTAATCCGTGACATTCTGTATGAATTTGAGCTGACAATTCAGAAATATTCATCCAAGACTCCGGCCCCTGGCGGCGGAATCCACCCACTGACCCGATCGGCGATGAACTACATCTCATCGCTGGGAGATTATAGTGGGACTCTCTCCGACATCATTCCCAGCGGAAAATCTCATATTCCAGCGTCGTACATGGAAACCAACGCCGTCGACGACGGTATCTCGTCTCCAGTGGCGGCGCAACTCGGGTGGTTAATTCTAGTCCTCCTCTGCAAACTCGACACAAAAGCAGCGCTCTACAAAGACGTATCTCTCTCCTATCTCTTCCTCGCCAACAACCTGAACTTCATCGTGAAGACAGTAACGGCGACCAATCTAAGAAGCCTCCTCGGCGGCGAGTGGGAGGCGAATCACACGAGCAAGATGAAGGTGTACACAGCGAACTACGAAGCAACGGCGTGGAACAGAGTGATGTCGTGTCTGCCGGAGAGGGGTTCGACGGAAGTGGGGTCGCCGGAGACGGCGAAGGAGGGGTTTAGAAAGTTCAATGCAGCGTTCGAAGAGGCGTACCGGAAACAGACGTCGTGGAGGGTGGAGGACGGGAAGCTGAGAGACGAGCTGAAAATGTGTATAGCGAGGAAGGTGGTGCCGAGGTACAGGGAGTTCTACGAGGGGTGCGCGGAGATGGTGGGTGTGGAGAGAGGGGTTTTGAGGTTCTCTCCCCATGATTTGGGGAATTACTTGTCGGATTTGTTTCATGGGGTTTCTTCCTCCGGTAGTAGTTCTTCTTCCTCTTCTTTTCACAGTGTTTGA 1788 49.89 MHIKGFFGFSHSSSSFPTSGRRTSLPSSYDPSQLAAMEEAITNSEPIIMKWDPDSSEFNRITFLFRHGRAESDEFLNSVNELRRTMDFVISENSTSNVLVLAQKLMQAAMRRLEKEFYQILSENRQNIDPESFSGRSSDRSTADGESRGDSVGDVDRVSADLKSIADCMIDSGYGKECVQIYKVIRKSIVDETLYRLETEKFKLSRIQRWNWDSVEHVIKIWMNSIKIAVNTLFLGEKILCDHVFSRSERIRESCFSDITKDGAITLFRFPELVAKGKKDSDKIFLLMELYEASYEVLPEIEVIFDSVSTSAIKTQAQTSMVKLADLIRDILYEFELTIQKYSSKTPAPGGGIHPLTRSAMNYISSLGDYSGTLSDIIPSGKSHIPASYMETNAVDDGISSPVAAQLGWLILVLLCKLDTKAALYKDVSLSYLFLANNLNFIVKTVTATNLRSLLGGEWEANHTSKMKVYTANYEATAWNRVMSCLPERGSTEVGSPETAKEGFRKFNAAFEEAYRKQTSWRVEDGKLRDELKMCIARKVVPRYREFYEGCAEMVGVERGVLRFSPHDLGNYLSDLFHGVSSSGSSSSSSSFHSV 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1187564 1189351 - Cp4.1LG01g04580.1 Cpe01g00211 461524

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00211 595 Gene3D Exocyst complex component Exo70 54 586 - -
Cpe01g00211 595 PANTHER EXOCYST COMPLEX PROTEIN EXO70 27 588 IPR004140 GO:0000145|GO:0006887
Cpe01g00211 595 MobiDBLite consensus disorder prediction 129 154 - -
Cpe01g00211 595 Pfam Exo70 exocyst complex subunit 222 575 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cpe01g00211 595 SUPERFAMILY Cullin repeat-like 39 578 IPR016159 -
Cpe01g00211 595 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 27 588 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00211 K07195 EXOC7, EXO70; exocyst complex component 7 - csv:101221801 895.19
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00211 Cpe-Chr1:1187564 Cpe02g01271 Cpe-Chr2:11374701 1.57E-164 dispersed
Cpe01g00211 Cpe-Chr1:1187564 Cpe01g01118 Cpe-Chr1:6597741 0 wgd
Cpe01g00211 Cpe-Chr1:1187564 Cpe16g00582 Cpe-Chr16:6587972 4.10E-159 wgd
Cpe01g00211 Cpe-Chr1:1187564 Cpe19g00379 Cpe-Chr19:3404478 2.26E-113 wgd
Cpe01g00211 Cpe-Chr1:1187564 Cpe02g01270 Cpe-Chr2:11363102 9.99E-80 wgd
Cpe01g00211 Cpe-Chr1:1187564 Cpe20g00789 Cpe-Chr20:7077959 4.33E-167 wgd
Cpe01g00211 Cpe-Chr1:1187564 Cpe03g00140 Cpe-Chr3:707814 3.18E-180 wgd
Cpe01g00211 Cpe-Chr1:1187564 Cpe05g00891 Cpe-Chr5:5902956 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe01g01290 CCT 10 651 EXO70 exocyst subunit family AT5G03540 74.9 1.7e-277 952.2
Cpe09g00367 CCT 10 641 EXO70 exocyst subunit family AT5G03540 74.9 5.0e-277 950.7
Cpe10g00315 CCT 1 639 EXO70 exocyst subunit family AT5G03540 67.1 4.9e-248 854.4
Cpe19g00500 CCT 1 620 EXO70 exocyst subunit family AT5G03540 65.8 2.2e-240 828.9
Cpe10g00315 CCT 1 639 EXO70 exocyst subunit family AT5G52340 74.7 2.1e-277 951.8
Cpe01g01290 CCT 12 651 EXO70 exocyst subunit family AT5G52340 73.6 1.6e-269 925.6
Cpe19g00500 CCT 1 620 EXO70 exocyst subunit family AT5G52340 72.8 2.1e-269 925.2
Cpe09g00367 CCT 12 641 EXO70 exocyst subunit family AT5G52340 72.1 2.2e-261 898.7
Cpe01g01290 CCT 147 651 EXO70 exocyst subunit family AT5G52350 58.7 4.1e-166 582.0
Cpe10g00315 CCT 145 632 EXO70 exocyst subunit family AT5G52350 60.3 5.1e-164 575.1
Cpe09g00367 CCT 147 641 EXO70 exocyst subunit family AT5G52350 57.3 9.2e-158 554.3
Cpe19g00500 CCT 145 613 EXO70 exocyst subunit family AT5G52350 58.0 8.7e-156 547.7
Cpe20g00898 CCT 1 625 EXO70 exocyst subunit family AT5G58430 65.7 4.9e-242 834.3
Cpe02g01140 CCT 1 624 EXO70 exocyst subunit family AT5G58430 65.6 5.5e-241 830.9
Cpe20g00898 CCT 1 624 EXO70 exocyst subunit family AT1G07000 52.0 6.5e-175 611.3
Cpe02g01140 CCT 1 623 EXO70 exocyst subunit family AT1G07000 50.9 5.2e-172 601.7
Cpe08g00067 . 58 671 EXO70 exocyst subunit family AT5G13150 51.5 1.9e-167 586.6
Cpe03g01216 . 62 676 EXO70 exocyst subunit family AT5G13150 50.2 2.7e-166 582.8
Cpe13g00544 . 66 602 EXO70 exocyst subunit family AT5G13150 51.1 1.5e-153 540.4
Cpe01g01977 . 81 677 EXO70 exocyst subunit family AT5G13990 54.5 1.6e-185 646.7
Cpe13g00544 . 64 603 EXO70 exocyst subunit family AT5G13990 56.4 3.4e-175 612.5
Cpe03g01013 . 12 611 EXO70 exocyst subunit family AT1G72470 64.1 9.8e-214 740.3
Cpe02g01761 CCT,ECH 12 599 EXO70 exocyst subunit family AT1G72470 61.7 4.0e-199 691.8
Cpe03g01013 . 12 609 EXO70 exocyst subunit family AT1G54090 62.3 1.2e-208 723.4
Cpe02g01761 CCT,ECH 9 594 EXO70 exocyst subunit family AT1G54090 59.8 1.1e-193 673.7
Cpe03g01013 . 9 610 EXO70 exocyst subunit family AT3G14090 63.4 1.4e-217 753.1
Cpe02g01761 CCT,ECH 9 594 EXO70 exocyst subunit family AT3G14090 61.3 1.1e-201 700.3
Cpe04g01614 CCT,CST 14 648 EXO70 exocyst subunit family AT5G50380 62.8 9.9e-228 786.9
Cpe18g00900 . 13 651 EXO70 exocyst subunit family AT5G50380 62.2 2.9e-227 785.4
Cpe09g00962 CCT 15 654 EXO70 exocyst subunit family AT5G50380 62.6 1.1e-226 783.5
Cpe20g00308 CCT,CST 17 624 EXO70 exocyst subunit family AT5G50380 61.6 3.4e-212 735.3
Cpe11g00545 . 15 684 EXO70 exocyst subunit family AT4G31540 73.3 5.7e-292 1000.3
Cpe07g00257 . 55 722 EXO70 exocyst subunit family AT4G31540 73.1 1.7e-291 998.8
Cpe01g00211 . 35 591 EXO70 exocyst subunit family AT3G55150 50.3 2.3e-146 516.5
Cpe01g01118 . 9 591 EXO70 exocyst subunit family AT2G39380 50.7 5.9e-150 528.5
Cpe03g00140 . 26 630 EXO70 exocyst subunit family AT3G09520 55.5 1.1e-180 630.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006856 2 1 1 2 2 1 0 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00211 Cpe_Chr01 FPKM 117.802803 118.915375 99.072815 105.218544 170.768967 157.231232 157.951019 123.710579 131.367325 123.82695