Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe01g00229 | ATGTTGAATCTTAACGATTTGATTATCAACTGCGATGAAACTTCGACGAAGCGGACTGTAATGGAAGATTCTGAGACGTCGAATTCTTCTGTCGTGAATGCCGATGAGGTCTGCAACAGTAGAGATGAAGATTCCTCTGTTTTAATCTTCAATATTCTGAAAAGGGAAAATTCCGGCGGTGGTGGAGGTGGTGCATCGCCGGAATTAGTGACTCAGACGCTATTTCCAGTGGCTGGAGGGTGGGGAGAAACTGGGTCTCCGGTTCCGAAGTCCCATTGGTTGAACCTGTCGTCGACTGGTGATTTCGGCGGCGAAGGCGTCGGTGGAGGAACTGCAGAGCTGAAAATTGTGCAGCAGAAACAGCAGCAGGTGAGGAAGAGCCGCCGTGGGCCGCGGTCCCGGAGTTCCCAGTACCGGGGAGTTACTTTTTACCGGCGGACAGGAAGATGGGAATCTCATATTTGGGATTGTGGGAAACAGGTTTATTTAGGTGGGTTCGACACTGCCCATGCTGCAGCAAGGGCATACGATCGAGCTGCGATAAAGTTTAGGGGAGTGAATGCAGATATAAACTTCAATATAAGCGACTACGATGAAGATATGAAGCAACTGAAGAATCTAAGCAAAGAAGAATTTGTGCACGTTCTTCGTCGACAAAGCACTGGATTTTCTCGTGGAGGATCGAAGCTGAGAGGATTATCTCTTCAAAAATATGGAAGATGGGAAACTCAAACCAGTCCAATTATGACGAAGAATGAAATCGAGGAAAGGTCGACAATGGTAGATGCAAACAATGGAGGCAATGGCCATAATCTTGATCTGAGCATTGGAGGAATTTTCAACTACCATTTAAGAAATTCTTCCCAAAACCTCAACATTCAAACACCAAAGAAAGAAAGCAATGGTGGTGGTGGGTATGGTGTGGGTGGACAACAACCTCATATTCCTCCTTCTATGTGGTCTGGTTTTTGCTCTGGTTTTTTAGCAGATAATCAGAACGTCGAGGAATGTATCTATCTATCTGTTTTGTTTGTTTACTTACGAATAAAAATCAAACCAGATGACTTTGTTTGGTACGGGAGTCGTCGATCTTGTTTTACGTAA | 1104 | 45.02 | MLNLNDLIINCDETSTKRTVMEDSETSNSSVVNADEVCNSRDEDSSVLIFNILKRENSGGGGGGASPELVTQTLFPVAGGWGETGSPVPKSHWLNLSSTGDFGGEGVGGGTAELKIVQQKQQQVRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVNADINFNISDYDEDMKQLKNLSKEEFVHVLRRQSTGFSRGGSKLRGLSLQKYGRWETQTSPIMTKNEIEERSTMVDANNGGNGHNLDLSIGGIFNYHLRNSSQNLNIQTPKKESNGGGGYGVGGQQPHIPPSMWSGFCSGFLADNQNVEECIYLSVLFVYLRIKIKPDDFVWYGSRRSCFT | 367 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 1301560 | 1305097 | + | Cp4.1LG01g04250.1 | Cpe01g00229 | 461542 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe01g00229 | 367 | ProSiteProfiles | AP2/ERF domain profile. | 137 | 193 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe01g00229 | 367 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SMZ-RELATED | 1 | 330 | - | - | |
Cpe01g00229 | 367 | Gene3D | AP2/ERF domain | 136 | 195 | IPR036955 | GO:0003700|GO:0006355 | |
Cpe01g00229 | 367 | SUPERFAMILY | DNA-binding domain | 136 | 195 | IPR016177 | GO:0003677 | |
Cpe01g00229 | 367 | CDD | AP2 | 137 | 195 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe01g00229 | 367 | Pfam | AP2 domain | 137 | 185 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe01g00229 | 367 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 1 | 330 | - | - | |
Cpe01g00229 | 367 | SMART | rav1_2 | 137 | 199 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g00229 | Cpe-Chr1:1301560 | Cpe05g01156 | Cpe-Chr5:7851229 | 1.64E-09 | dispersed | |
Cpe01g00229 | Cpe-Chr1:1301560 | Cpe01g01135 | Cpe-Chr1:6736665 | 4.59E-145 | wgd | |
Cpe01g00229 | Cpe-Chr1:1301560 | Cpe16g00565 | Cpe-Chr16:6443669 | 1.56E-09 | wgd | |
Cpe01g00229 | Cpe-Chr1:1301560 | Cpe19g00398 | Cpe-Chr19:3551661 | 3.50E-09 | wgd | |
Cpe01g00229 | Cpe-Chr1:1301560 | Cpe03g00153 | Cpe-Chr3:770883 | 1.96E-09 | wgd | |
Cpe01g00229 | Cpe-Chr1:1301560 | Cpe05g00875 | Cpe-Chr5:5758181 | 8.41E-10 | wgd | |
Cpe01g00229 | Cpe-Chr1:1301560 | Cpe08g01126 | Cpe-Chr8:8455417 | 8.66E-59 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48731 | PF00847 | AP2 | 4.70E-10 | CL0081 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe01g00229 | K09284 | - | csv:101204131 | 490.73 |