Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00229 ATGTTGAATCTTAACGATTTGATTATCAACTGCGATGAAACTTCGACGAAGCGGACTGTAATGGAAGATTCTGAGACGTCGAATTCTTCTGTCGTGAATGCCGATGAGGTCTGCAACAGTAGAGATGAAGATTCCTCTGTTTTAATCTTCAATATTCTGAAAAGGGAAAATTCCGGCGGTGGTGGAGGTGGTGCATCGCCGGAATTAGTGACTCAGACGCTATTTCCAGTGGCTGGAGGGTGGGGAGAAACTGGGTCTCCGGTTCCGAAGTCCCATTGGTTGAACCTGTCGTCGACTGGTGATTTCGGCGGCGAAGGCGTCGGTGGAGGAACTGCAGAGCTGAAAATTGTGCAGCAGAAACAGCAGCAGGTGAGGAAGAGCCGCCGTGGGCCGCGGTCCCGGAGTTCCCAGTACCGGGGAGTTACTTTTTACCGGCGGACAGGAAGATGGGAATCTCATATTTGGGATTGTGGGAAACAGGTTTATTTAGGTGGGTTCGACACTGCCCATGCTGCAGCAAGGGCATACGATCGAGCTGCGATAAAGTTTAGGGGAGTGAATGCAGATATAAACTTCAATATAAGCGACTACGATGAAGATATGAAGCAACTGAAGAATCTAAGCAAAGAAGAATTTGTGCACGTTCTTCGTCGACAAAGCACTGGATTTTCTCGTGGAGGATCGAAGCTGAGAGGATTATCTCTTCAAAAATATGGAAGATGGGAAACTCAAACCAGTCCAATTATGACGAAGAATGAAATCGAGGAAAGGTCGACAATGGTAGATGCAAACAATGGAGGCAATGGCCATAATCTTGATCTGAGCATTGGAGGAATTTTCAACTACCATTTAAGAAATTCTTCCCAAAACCTCAACATTCAAACACCAAAGAAAGAAAGCAATGGTGGTGGTGGGTATGGTGTGGGTGGACAACAACCTCATATTCCTCCTTCTATGTGGTCTGGTTTTTGCTCTGGTTTTTTAGCAGATAATCAGAACGTCGAGGAATGTATCTATCTATCTGTTTTGTTTGTTTACTTACGAATAAAAATCAAACCAGATGACTTTGTTTGGTACGGGAGTCGTCGATCTTGTTTTACGTAA 1104 45.02 MLNLNDLIINCDETSTKRTVMEDSETSNSSVVNADEVCNSRDEDSSVLIFNILKRENSGGGGGGASPELVTQTLFPVAGGWGETGSPVPKSHWLNLSSTGDFGGEGVGGGTAELKIVQQKQQQVRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVNADINFNISDYDEDMKQLKNLSKEEFVHVLRRQSTGFSRGGSKLRGLSLQKYGRWETQTSPIMTKNEIEERSTMVDANNGGNGHNLDLSIGGIFNYHLRNSSQNLNIQTPKKESNGGGGYGVGGQQPHIPPSMWSGFCSGFLADNQNVEECIYLSVLFVYLRIKIKPDDFVWYGSRRSCFT 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1301560 1305097 + Cp4.1LG01g04250.1 Cpe01g00229 461542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00229 367 ProSiteProfiles AP2/ERF domain profile. 137 193 IPR001471 GO:0003700|GO:0006355
Cpe01g00229 367 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SMZ-RELATED 1 330 - -
Cpe01g00229 367 Gene3D AP2/ERF domain 136 195 IPR036955 GO:0003700|GO:0006355
Cpe01g00229 367 SUPERFAMILY DNA-binding domain 136 195 IPR016177 GO:0003677
Cpe01g00229 367 CDD AP2 137 195 IPR001471 GO:0003700|GO:0006355
Cpe01g00229 367 Pfam AP2 domain 137 185 IPR001471 GO:0003700|GO:0006355
Cpe01g00229 367 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 330 - -
Cpe01g00229 367 SMART rav1_2 137 199 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00229 Cpe-Chr1:1301560 Cpe05g01156 Cpe-Chr5:7851229 1.64E-09 dispersed
Cpe01g00229 Cpe-Chr1:1301560 Cpe01g01135 Cpe-Chr1:6736665 4.59E-145 wgd
Cpe01g00229 Cpe-Chr1:1301560 Cpe16g00565 Cpe-Chr16:6443669 1.56E-09 wgd
Cpe01g00229 Cpe-Chr1:1301560 Cpe19g00398 Cpe-Chr19:3551661 3.50E-09 wgd
Cpe01g00229 Cpe-Chr1:1301560 Cpe03g00153 Cpe-Chr3:770883 1.96E-09 wgd
Cpe01g00229 Cpe-Chr1:1301560 Cpe05g00875 Cpe-Chr5:5758181 8.41E-10 wgd
Cpe01g00229 Cpe-Chr1:1301560 Cpe08g01126 Cpe-Chr8:8455417 8.66E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48731 PF00847 AP2 4.70E-10 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00229 K09284 - csv:101204131 490.73