Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00231 ATGGCGGACCCTCCTACTAGTCCTGCCGGCGGTAGCCATGAGAGCGGCGGTGAGCAGAGCCCCCACACTGGCGGCGTTCGCGAGCAGGACCGTTACCTTCCGATCGCTAACATCAGTCGGATCATGAAGAAGGCCTTGCCTGCTAATGGCAAGATCGCCAAGGATGCTAAGGATACCGTCCAAGAATGCGTCTCCGAATTCATTAGCTTTATCACTAGCGAGGCGAGTGATAAGTGCCAGAAGGAGAAGAGGAAGACTATTAATGGCGATGATTTGCTTTGGGCCATGGCAACGTTGGGTTTCGAGGATTATATTGATCCGCTTAAGTCGTACCTTACTAGGTACCGTGAGTGTGATGCGAAAGGATCTTCGAGGGGTGGTGAAGAATCTGCTAAAAGAGATGCAGTTGGAGCCTTGCCTGGTCAAAATTCCCAGCAGTACTTGCAGCCAGGAGCATTGACCTACATTAACACTCAAGAGATAGACCAGTTTCTTCACTTCCCCTCATATATGTATCCTACCTTTTCTTCTCATTTGCTTGTCCAGAAGCTCGTAGGATTTCATCCTAGGAAAGAAGATTTCATGGTCTTGAAAAATTGTCTGCATAAAGATACTATTCGCCTGGAACAATATCCTACACCTAGCACCAAATTTTCTGAGATGTAA 666 47.75 MADPPTSPAGGSHESGGEQSPHTGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKSYLTRYRECDAKGSSRGGEESAKRDAVGALPGQNSQQYLQPGALTYINTQEIDQFLHFPSYMYPTFSSHLLVQKLVGFHPRKEDFMVLKNCLHKDTIRLEQYPTPSTKFSEM 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1311500 1317440 + Cp4.1LG01g04260.1 Cpe01g00231 461544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00231 221 SUPERFAMILY Histone-fold 29 128 IPR009072 GO:0046982
Cpe01g00231 221 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 32 96 IPR003958 -
Cpe01g00231 221 Gene3D Histone, subunit A 22 152 IPR009072 GO:0046982
Cpe01g00231 221 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 154 - -
Cpe01g00231 221 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 154 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cpe01g00231 221 ProSitePatterns NF-YB/HAP3 subunit signature. 63 79 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cpe01g00231 221 MobiDBLite consensus disorder prediction 1 28 - -
Cpe01g00231 221 MobiDBLite consensus disorder prediction 121 142 - -
Cpe01g00231 221 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Cpe01g00231 221 PRINTS CCAAT-binding transcription factor subunit A signature 60 78 - -
Cpe01g00231 221 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00231 Cpe-Chr1:1311500 Cpe05g01389 Cpe-Chr5:9768058 1.46E-56 dispersed
Cpe01g00231 Cpe-Chr1:1311500 Cpe03g00156 Cpe-Chr3:787733 3.58E-79 wgd
Cpe01g00231 Cpe-Chr1:1311500 Cpe08g01124 Cpe-Chr8:8440769 6.24E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48732 PF00808 CBFD_NFYB_HMF 9.40E-28 CL0012 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00231 K08065 - csv:101223123 292.352