Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe01g00231 | ATGGCGGACCCTCCTACTAGTCCTGCCGGCGGTAGCCATGAGAGCGGCGGTGAGCAGAGCCCCCACACTGGCGGCGTTCGCGAGCAGGACCGTTACCTTCCGATCGCTAACATCAGTCGGATCATGAAGAAGGCCTTGCCTGCTAATGGCAAGATCGCCAAGGATGCTAAGGATACCGTCCAAGAATGCGTCTCCGAATTCATTAGCTTTATCACTAGCGAGGCGAGTGATAAGTGCCAGAAGGAGAAGAGGAAGACTATTAATGGCGATGATTTGCTTTGGGCCATGGCAACGTTGGGTTTCGAGGATTATATTGATCCGCTTAAGTCGTACCTTACTAGGTACCGTGAGTGTGATGCGAAAGGATCTTCGAGGGGTGGTGAAGAATCTGCTAAAAGAGATGCAGTTGGAGCCTTGCCTGGTCAAAATTCCCAGCAGTACTTGCAGCCAGGAGCATTGACCTACATTAACACTCAAGAGATAGACCAGTTTCTTCACTTCCCCTCATATATGTATCCTACCTTTTCTTCTCATTTGCTTGTCCAGAAGCTCGTAGGATTTCATCCTAGGAAAGAAGATTTCATGGTCTTGAAAAATTGTCTGCATAAAGATACTATTCGCCTGGAACAATATCCTACACCTAGCACCAAATTTTCTGAGATGTAA | 666 | 47.75 | MADPPTSPAGGSHESGGEQSPHTGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKSYLTRYRECDAKGSSRGGEESAKRDAVGALPGQNSQQYLQPGALTYINTQEIDQFLHFPSYMYPTFSSHLLVQKLVGFHPRKEDFMVLKNCLHKDTIRLEQYPTPSTKFSEM | 221 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 1311500 | 1317440 | + | Cp4.1LG01g04260.1 | Cpe01g00231 | 461544 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe01g00231 | 221 | SUPERFAMILY | Histone-fold | 29 | 128 | IPR009072 | GO:0046982 | |
Cpe01g00231 | 221 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 32 | 96 | IPR003958 | - | |
Cpe01g00231 | 221 | Gene3D | Histone, subunit A | 22 | 152 | IPR009072 | GO:0046982 | |
Cpe01g00231 | 221 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED | 1 | 154 | - | - | |
Cpe01g00231 | 221 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 1 | 154 | IPR027113 | GO:0001228|GO:0006355|GO:0016602 | |
Cpe01g00231 | 221 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 63 | 79 | IPR003956 | GO:0005634|GO:0006355|GO:0043565 | |
Cpe01g00231 | 221 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Cpe01g00231 | 221 | MobiDBLite | consensus disorder prediction | 121 | 142 | - | - | |
Cpe01g00231 | 221 | PRINTS | CCAAT-binding transcription factor subunit A signature | 98 | 116 | - | - | |
Cpe01g00231 | 221 | PRINTS | CCAAT-binding transcription factor subunit A signature | 60 | 78 | - | - | |
Cpe01g00231 | 221 | PRINTS | CCAAT-binding transcription factor subunit A signature | 79 | 97 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g00231 | Cpe-Chr1:1311500 | Cpe05g01389 | Cpe-Chr5:9768058 | 1.46E-56 | dispersed | |
Cpe01g00231 | Cpe-Chr1:1311500 | Cpe03g00156 | Cpe-Chr3:787733 | 3.58E-79 | wgd | |
Cpe01g00231 | Cpe-Chr1:1311500 | Cpe08g01124 | Cpe-Chr8:8440769 | 6.24E-71 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48732 | PF00808 | CBFD_NFYB_HMF | 9.40E-28 | CL0012 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe01g00231 | K08065 | - | csv:101223123 | 292.352 |