Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe01g00236 | ATGAGCTCTCCACCAACGCCGACCACTCTTCCTAACCCCCCCTTATCTTCCTCCGCCACCAACTTCGTGTCGCCTCCCACTTCTCAACAGTCGTCGACGCCGGTCGCGGTGGTTCTCAGCCCCTGCGCCGCCTGCAAGATCCTCCGGCGCCGCTGCATCGAGAAGTGCGTTTTGGCTCCTTATTTTCCTCCGACGGAGCCCCTCAAATTCACCATTGCTCATAGAGTGTTTGGAGCTAGCAATATCATCAAGTTCTTGCAAGAGCTGCCAGAGTGTCAAAGAACAGATGCAGTGAGCAGTATGGTGTATGAAGCAAATGCAAGGCTACGGGATCCAGTGTACGGCAGCGCGGGCGCAATTTGCCAGCTGCAAACGCAAGTGAGCGAGTTGCAGGCACAGCTAGCGAAGGCCAGGGCAGAGGTAGCCAATATGCAGCAACAACAAGCCAACTTATTAGCGTTGATTTGCATGGAAATGAAGCAATCAGCGGAGCCCATTTGGGCATCGCACCTTGCGGATACCAGTTGGTTCCTTGACGATGCTACTCTAAGCGCACCGTGGGAGCCGCTCTGGACATGA | 579 | 55.09 | MSSPPTPTTLPNPPLSSSATNFVSPPTSQQSSTPVAVVLSPCAACKILRRRCIEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYEANARLRDPVYGSAGAICQLQTQVSELQAQLAKARAEVANMQQQQANLLALICMEMKQSAEPIWASHLADTSWFLDDATLSAPWEPLWT | 192 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 1342584 | 1343725 | + | Cp4.1LG01g04270.1 | Cpe01g00236 | 461549 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe01g00236 | 192 | Coils | Coil | 120 | 154 | - | - | |
| Cpe01g00236 | 192 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 30 | 167 | - | - | |
| Cpe01g00236 | 192 | ProSiteProfiles | LOB domain profile. | 40 | 141 | IPR004883 | - | |
| Cpe01g00236 | 192 | MobiDBLite | consensus disorder prediction | 13 | 32 | - | - | |
| Cpe01g00236 | 192 | Pfam | Lateral organ boundaries (LOB) domain | 41 | 138 | IPR004883 | - | |
| Cpe01g00236 | 192 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 1 | 30 | 167 | - | - | |
| Cpe01g00236 | 192 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe01g00236 | Cpe-Chr1:1342584 | Cpe02g01297 | Cpe-Chr2:11546733 | 2.46E-26 | dispersed | |
| Cpe01g00236 | Cpe-Chr1:1342584 | Cpe01g01139 | Cpe-Chr1:6773070 | 3.27E-105 | wgd | |
| Cpe01g00236 | Cpe-Chr1:1342584 | Cpe13g00820 | Cpe-Chr13:7303134 | 5.22E-68 | wgd | |
| Cpe01g00236 | Cpe-Chr1:1342584 | Cpe16g00556 | Cpe-Chr16:6368390 | 6.15E-76 | wgd | |
| Cpe01g00236 | Cpe-Chr1:1342584 | Cpe20g00754 | Cpe-Chr20:6701146 | 3.27E-70 | wgd | |
| Cpe01g00236 | Cpe-Chr1:1342584 | Cpe05g00866 | Cpe-Chr5:5685489 | 3.86E-75 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 48733 | PF03195 | LOB | 2.10E-39 | No_clan | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe01g00236 | - | - | csv:101204854 | 298.901 |