Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00305 ATGGCTGATTCCAGGGATCTTCCTCCTCGCCGCGGAGCAGGAATAGTCAAAAGTATACGCTTGGAGAACTTCATGTGTCACAGCAACTTGTATATTGAGTTTGGCGAGTGGCTCAATTTCATTACAGGGCAGAACGGAAGTGGTAAGAGTGCTATACTGACTGCTTTATGTGTTGCATTTGGCTGTCGAGCTAGAGGCACCCAAAGGGCGTCGACGTTGAAGGATTTTATTAAAACTGGTTGCAGTCATGCTGTCATCCAAGTTGAAATGGAAAATTCTGGGGAGGATGCTTTTAAGCCTGGAATATATGGTAATGTTATAATCATAGAGAGAAGGATTTCCGAAGCCTCAGGTGCCATTGTTTTGAAAGATTGTCAAGGAAAGAAGGTTTCCAGTCGGAGGGATGAACTACGAGAGCTTGTAGACCATTTTAATATAGATGTTGAGAACCCATGCGTGATAATGAGTCAGGACAAAAGTAGAGAGTTCCTGCATTCTGGGAATGACAAAGACAAATTCAAGTTCTTCTTCAAAGCTACTCTTCTCCAGCAAGTTGATGATCTGTTGAAAAACATTTTTCATCAACTGAGATCTGCGAATGCACTTGTTGATGACTTGGAGTCTACCATACGACCTGTGGAGAAGGAGCTAAATGAGCTGCAAGGAAAAATAAAAAACATGGAGCACGTAGAAGAAATCTATCAACAAGTCCAACAGTTAAAGAAGAAGCTTGCGTGGTCATGGGTATATGATGTAGACAAGCAGCTTCTGGAGCAAAGTGTAAAAATAGGAAAGCTCAAAGATCGCATCCCTATTTGTCGAGCAAAGATTGATCATCAACAGGGTCTGGCAGAAAAATTAAGAGAACGCTTTATCGAGAAGAAGGCTCAAATTGCAAGCATGATGGAGAAAACCTCGGAAGTTAGAAGACTGAAGGAAGAATTGCAAGAAACCCTTTCCTCGGCAACAAGAGAGAAGCTCGGGCTTGAAGAAGAGCATGGCCGCAAAATGAACTACATTCAAAAGATGGCGAAACGTGTTAGGTTGCTTGAGCTACAAGTTCATGATGTTCATGAGCAGCACATAAGAAATACACAGGCTGAAGAATCTGAAATTGAGGAAAAGTTGAAGGAACTCGAACTGGAGACTGAAGCTGCCAAGTCAACAGTCATGAGGTTAAAGGAGGAGGAAAATGGCTTACTGGATAGTCTACACAGTGGGAGAAGTGAAATAAAAAAGATTGCTGAAGAGATTGAAGGTTATGAAAAAAAGCATAATGAATTTTCACGCTCTATTCGAGAGCTAAGGCAGCATCAAACAAACAAGGTTACAGCTTTTGGAGGTGATAGAGTCATTCAATTATTACGTGTGATTGAGAGGCAAAATCGAAGATTCAAGAAACCTCCCATTGGTCCAATTGGTGCCCATCTGAATTTGGTCAATGGTGACGTGTGGGCTTCTGCTGTTGAAAATGCCATTGGGAGGTTGCTCAATGCATTCATCGTGACCAATCATCAAGATTCTCTTCTTTTGAGAGGATGTGCTAATGAAGCCAATTATAGGCAACTCCCAATTATCATCTATGACTTTTCAAGACCACTGTTAGATATTCCAGCTCACATGCTTCCTCAAACAAAGCACCCTACAACCCTTTCAGTCATTCATTCTGAAAGCCATACTGTCATCAATGTTTTGATAGATAAGGGTGATGCTGAGAGGCAAGTGCTTGTTAAAGATTATGATGTGGGTAAATCAGTCGCGTTTGACCAGCGGATCAAAAATCTCAAGGAGGTCTTTACATTAGATGGATATAAAATGTTTTCTCGTGGTTCTGTTCAGACAATTCTTCCCCCAGTTAAAAGACCTAGAAGTGGCAGACTTTGTAGTTCTTTTGATGACCAGATTAAAAGTCTTGAAAAAGATACATCGAACATGAAGGAAGAAGCTGAGCAATGTAGGAAGAGGAAGAGAGCTACAGAAGAACAACTCCGGGGTCTTGAAGAGAACCTAAGCAATGCCAAGCGGAGATGTCAAAACGCGGAACGCATTTTAATGTCCAAAAATTTGGAGCTACAAGATTTACGGAAGTCACAGGTTGCTGGAACTAGTTCATTACCTTCATCAAACGTTGACGAGCTTCATCAAGAAATTTCTAAAATCAAAGAGGAGATGGAAGAGAATAAATCGCTTCTGGAAAAGTTCAGAGTGAGAATGAAAGAAGCGGAAGCCAAGGCAAAAGATCTTAAACTATCATTTGAGAATCTGTGTGAGTCAGCGAAAGGAGAAGTTGATGCATATGAAGAAGCCGAGAGAGATATGTTGCAGATTGAACGAGATCTGCATTCTGCCGAAAAGGAGATGAATCATTATGAAGGTATTATGACTAACAAGGTCCTGTTTGATATCAAAGAGGCAGAGAGACAATATGAGGAGCTCGAGCGCCATCGTAAGGAGAGTTACAGTAAGGCTTCAATAATATCTCCTGAGAGTGAAATTGAGGCTTTAGGTGATTGGGATGGGAGCACACCTGAACAACTCAGTGCACAATTAAACAGGCTAAATCAGAGACTTAGTAACGAGACCCGACAAAATAAATCACAGGCTTGCCAGAAAGCTCTTGAGCAACGGTGGAACAAGTTTGAAAGGAATGCTAATCTTTTGAAGCGTCAATTGACTTGGCAATTTAATGGCCATTTAAGAAAAAAAGGGATCAGTGGACATATAAAAATCAATTACGAGGAAAAGACCCTCTCGGTTGAGGTGAAGATGCCCCAAGATGCATCCAGCAGTTCTGTTCGTGATACCCGTGGACTTTCAGGTGGAGAACGGTCATTTTCCACTCTATGCTTCACTTTGGCATTACACGAAATGACAGAAGCCCCATTTCGAGCAATGGATGAGTTTGATGTGTTTATGGATGCAGTAAGTCGGAAAATTAGCTTAGACACTCTTGTGGATTTTGCATTGTCACAAGGTTCCCAATGGATATTTATCACACCTCATGATATCGGCGTGGTGAAACAAGGAGAACGAATCAAGAAGCAGCAAATGGCAGCTCCTCGATCATGA 3069 41.58 MADSRDLPPRRGAGIVKSIRLENFMCHSNLYIEFGEWLNFITGQNGSGKSAILTALCVAFGCRARGTQRASTLKDFIKTGCSHAVIQVEMENSGEDAFKPGIYGNVIIIERRISEASGAIVLKDCQGKKVSSRRDELRELVDHFNIDVENPCVIMSQDKSREFLHSGNDKDKFKFFFKATLLQQVDDLLKNIFHQLRSANALVDDLESTIRPVEKELNELQGKIKNMEHVEEIYQQVQQLKKKLAWSWVYDVDKQLLEQSVKIGKLKDRIPICRAKIDHQQGLAEKLRERFIEKKAQIASMMEKTSEVRRLKEELQETLSSATREKLGLEEEHGRKMNYIQKMAKRVRLLELQVHDVHEQHIRNTQAEESEIEEKLKELELETEAAKSTVMRLKEEENGLLDSLHSGRSEIKKIAEEIEGYEKKHNEFSRSIRELRQHQTNKVTAFGGDRVIQLLRVIERQNRRFKKPPIGPIGAHLNLVNGDVWASAVENAIGRLLNAFIVTNHQDSLLLRGCANEANYRQLPIIIYDFSRPLLDIPAHMLPQTKHPTTLSVIHSESHTVINVLIDKGDAERQVLVKDYDVGKSVAFDQRIKNLKEVFTLDGYKMFSRGSVQTILPPVKRPRSGRLCSSFDDQIKSLEKDTSNMKEEAEQCRKRKRATEEQLRGLEENLSNAKRRCQNAERILMSKNLELQDLRKSQVAGTSSLPSSNVDELHQEISKIKEEMEENKSLLEKFRVRMKEAEAKAKDLKLSFENLCESAKGEVDAYEEAERDMLQIERDLHSAEKEMNHYEGIMTNKVLFDIKEAERQYEELERHRKESYSKASIISPESEIEALGDWDGSTPEQLSAQLNRLNQRLSNETRQNKSQACQKALEQRWNKFERNANLLKRQLTWQFNGHLRKKGISGHIKINYEEKTLSVEVKMPQDASSSSVRDTRGLSGGERSFSTLCFTLALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALSQGSQWIFITPHDIGVVKQGERIKKQQMAAPRS 1022
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1718370 1730833 - Cp4.1LG01g03560.1 Cpe01g00305 461618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00305 1022 Coils Coil 710 758 - -
Cpe01g00305 1022 Coils Coil 284 332 - -
Cpe01g00305 1022 Coils Coil 850 890 - -
Cpe01g00305 1022 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 10 863 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Cpe01g00305 1022 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 864 1022 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Cpe01g00305 1022 CDD ABC_SMC6_euk 900 1022 - -
Cpe01g00305 1022 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 1013 IPR027417 -
Cpe01g00305 1022 Gene3D - 628 799 - -
Cpe01g00305 1022 Coils Coil 795 822 - -
Cpe01g00305 1022 Coils Coil 404 438 - -
Cpe01g00305 1022 Pfam RecF/RecN/SMC N terminal domain 16 1012 IPR003395 -
Cpe01g00305 1022 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 10 863 - -
Cpe01g00305 1022 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 864 1022 - -
Cpe01g00305 1022 Gene3D - 843 1019 IPR027417 -
Cpe01g00305 1022 Gene3D - 15 261 IPR027417 -
Cpe01g00305 1022 Coils Coil 766 793 - -
Cpe01g00305 1022 Coils Coil 203 230 - -
Cpe01g00305 1022 Coils Coil 635 697 - -
Cpe01g00305 1022 Coils Coil 362 396 - -
Cpe01g00305 1022 CDD ABC_SMC6_euk 16 168 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00305 Cpe-Chr1:1718370 Cpe12g00841 Cpe-Chr12:7452762 4.10E-20 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00305 K22804 - csv:101208493 1747.64