Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe01g00344 | ATGGGCACACGAACCCAGCAACCCTGCCATGACGACGACGACGACGACCTCCCAGGCGGCCCTGGCCCTGCTGCCACCACAATTTCAGGTCAGTCCGTTTCCATGAGTGGTAGTGTCGGTTCTCCTTCTAACCGAAGCGAGCAAACCATGGCGACGCCTGCTAGCGACAACACTTTTCTTCGATTGAACAACCTCGACATCCATGGCGATGAGGCGGGCTCGCAACCACCTACTGCTAACGTGAAGAAAAAGAGGGGTCAGCGTGCTGTTGGAGGGGACAAGAGTGGAAGAGGGCTTCGCCAATTTAGCATGAAAGTTTGTGAGAAAGTGGAGAGTAAGGGAAGAACGACCTACAACGAGGTAGCAGACGAACTTGTTGCAGAGTTTGCTGATCCTGGCAACAGTCTTGCGACACCGGATCAGCAACAGTACGATGAAAAAAACATCAGGCGAAGGGTGTATGACGCGCTGAATGTTCTCATGGCAATGGATATCATATCAAAAGATAAAAAAGAGATACAATGGAAGGGTCTGCCACGTACAAGCCTGAACGATATCGAAGAACTAAAGGCAGAGCGTCTTGGACTTAGAAATAGGATTGAAAAGAAAGCGGCGTACTTGCAAGAGCTGGAGGAGCAGTATGTAGGCCTTCAGAACCTAATTCAGCGAAACGAACAGTTATTCAGTTCTGAGAATGCACCCAGTGGTGGCGTGTCTTTACCTTTCATCCTGGTGCAGACAAGGCCTCATGCAACTGTTGAGATAGAAATATCAGAAGATATGCAGCTGGTGCACTTTGACTTCAACAGTACTCCGTTTGAGCTCCACGATGACAATTACGTTTTGAAGGCGATGAAATTTTGCGACAGACCGCAATGCGACAACACGGCGCAAAATTTCGCTCCTGATGCAGGGGAGGGTTCTAGCATGTCAGGCATGTATCAACCACCCCAGATCCCTCTTCCTTCAATGTCTAACACGCCCGTTAGAACTCCAACCTCGCCACCACTTCCTGGAATTATAAAAGCTCGTGTTAAACACGAGCATTGA | 1050 | 49.33 | MGTRTQQPCHDDDDDDLPGGPGPAATTISGQSVSMSGSVGSPSNRSEQTMATPASDNTFLRLNNLDIHGDEAGSQPPTANVKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPGNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKAAYLQELEEQYVGLQNLIQRNEQLFSSENAPSGGVSLPFILVQTRPHATVEIEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCDRPQCDNTAQNFAPDAGEGSSMSGMYQPPQIPLPSMSNTPVRTPTSPPLPGIIKARVKHEH | 349 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 1954446 | 1959919 | - | Cp4.1LG01g03190.1 | Cpe01g00344 | 461657 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe01g00344 | 349 | Pfam | Transcription factor DP | 185 | 292 | IPR014889 | - | |
| Cpe01g00344 | 349 | CDD | DP_DD | 182 | 285 | IPR014889 | - | |
| Cpe01g00344 | 349 | SUPERFAMILY | Winged helix DNA-binding domain | 97 | 178 | IPR036390 | - | |
| Cpe01g00344 | 349 | SMART | DP_2 | 184 | 347 | IPR014889 | - | |
| Cpe01g00344 | 349 | Gene3D | - | 90 | 182 | IPR036388 | - | |
| Cpe01g00344 | 349 | MobiDBLite | consensus disorder prediction | 25 | 62 | - | - | |
| Cpe01g00344 | 349 | MobiDBLite | consensus disorder prediction | 1 | 97 | - | - | |
| Cpe01g00344 | 349 | Coils | Coil | 193 | 227 | - | - | |
| Cpe01g00344 | 349 | PANTHER | TRANSCRIPTION FACTOR DP | 26 | 349 | - | - | |
| Cpe01g00344 | 349 | Pfam | E2F/DP family winged-helix DNA-binding domain | 97 | 177 | IPR003316 | GO:0005667|GO:0006355 | |
| Cpe01g00344 | 349 | SMART | E2F_TDP_2 | 94 | 177 | IPR003316 | GO:0005667|GO:0006355 | |
| Cpe01g00344 | 349 | SUPERFAMILY | E2F-DP heterodimerization region | 183 | 303 | IPR037241 | - | |
| Cpe01g00344 | 349 | PANTHER | TRANSCRIPTION FACTOR DP | 26 | 349 | IPR015648 | GO:0005667|GO:0051726 | |
| Cpe01g00344 | 349 | Gene3D | Transcription factor DP | 183 | 312 | IPR038168 | - | |
| Cpe01g00344 | 349 | PIRSF | Txn_factor_DP | 5 | 349 | IPR015648 | GO:0005667|GO:0051726 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe01g00344 | Cpe-Chr1:1954446 | Cpe14g00221 | Cpe-Chr14:1255423 | 0 | dispersed | |
| Cpe01g00343 | Cpe-Chr1:1952251 | Cpe01g00344 | Cpe-Chr1:1954446 | 1.52E-72 | tandem |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 48742 | PF08781 | DP | 3.50E-41 | No_clan | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe01g00344 | K04683 | - | csv:101216863 | 637.491 |