Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00344 ATGGGCACACGAACCCAGCAACCCTGCCATGACGACGACGACGACGACCTCCCAGGCGGCCCTGGCCCTGCTGCCACCACAATTTCAGGTCAGTCCGTTTCCATGAGTGGTAGTGTCGGTTCTCCTTCTAACCGAAGCGAGCAAACCATGGCGACGCCTGCTAGCGACAACACTTTTCTTCGATTGAACAACCTCGACATCCATGGCGATGAGGCGGGCTCGCAACCACCTACTGCTAACGTGAAGAAAAAGAGGGGTCAGCGTGCTGTTGGAGGGGACAAGAGTGGAAGAGGGCTTCGCCAATTTAGCATGAAAGTTTGTGAGAAAGTGGAGAGTAAGGGAAGAACGACCTACAACGAGGTAGCAGACGAACTTGTTGCAGAGTTTGCTGATCCTGGCAACAGTCTTGCGACACCGGATCAGCAACAGTACGATGAAAAAAACATCAGGCGAAGGGTGTATGACGCGCTGAATGTTCTCATGGCAATGGATATCATATCAAAAGATAAAAAAGAGATACAATGGAAGGGTCTGCCACGTACAAGCCTGAACGATATCGAAGAACTAAAGGCAGAGCGTCTTGGACTTAGAAATAGGATTGAAAAGAAAGCGGCGTACTTGCAAGAGCTGGAGGAGCAGTATGTAGGCCTTCAGAACCTAATTCAGCGAAACGAACAGTTATTCAGTTCTGAGAATGCACCCAGTGGTGGCGTGTCTTTACCTTTCATCCTGGTGCAGACAAGGCCTCATGCAACTGTTGAGATAGAAATATCAGAAGATATGCAGCTGGTGCACTTTGACTTCAACAGTACTCCGTTTGAGCTCCACGATGACAATTACGTTTTGAAGGCGATGAAATTTTGCGACAGACCGCAATGCGACAACACGGCGCAAAATTTCGCTCCTGATGCAGGGGAGGGTTCTAGCATGTCAGGCATGTATCAACCACCCCAGATCCCTCTTCCTTCAATGTCTAACACGCCCGTTAGAACTCCAACCTCGCCACCACTTCCTGGAATTATAAAAGCTCGTGTTAAACACGAGCATTGA 1050 49.33 MGTRTQQPCHDDDDDDLPGGPGPAATTISGQSVSMSGSVGSPSNRSEQTMATPASDNTFLRLNNLDIHGDEAGSQPPTANVKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPGNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKAAYLQELEEQYVGLQNLIQRNEQLFSSENAPSGGVSLPFILVQTRPHATVEIEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCDRPQCDNTAQNFAPDAGEGSSMSGMYQPPQIPLPSMSNTPVRTPTSPPLPGIIKARVKHEH 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1954446 1959919 - Cp4.1LG01g03190.1 Cpe01g00344 461657

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00344 349 Pfam Transcription factor DP 185 292 IPR014889 -
Cpe01g00344 349 CDD DP_DD 182 285 IPR014889 -
Cpe01g00344 349 SUPERFAMILY Winged helix DNA-binding domain 97 178 IPR036390 -
Cpe01g00344 349 SMART DP_2 184 347 IPR014889 -
Cpe01g00344 349 Gene3D - 90 182 IPR036388 -
Cpe01g00344 349 MobiDBLite consensus disorder prediction 25 62 - -
Cpe01g00344 349 MobiDBLite consensus disorder prediction 1 97 - -
Cpe01g00344 349 Coils Coil 193 227 - -
Cpe01g00344 349 PANTHER TRANSCRIPTION FACTOR DP 26 349 - -
Cpe01g00344 349 Pfam E2F/DP family winged-helix DNA-binding domain 97 177 IPR003316 GO:0005667|GO:0006355
Cpe01g00344 349 SMART E2F_TDP_2 94 177 IPR003316 GO:0005667|GO:0006355
Cpe01g00344 349 SUPERFAMILY E2F-DP heterodimerization region 183 303 IPR037241 -
Cpe01g00344 349 PANTHER TRANSCRIPTION FACTOR DP 26 349 IPR015648 GO:0005667|GO:0051726
Cpe01g00344 349 Gene3D Transcription factor DP 183 312 IPR038168 -
Cpe01g00344 349 PIRSF Txn_factor_DP 5 349 IPR015648 GO:0005667|GO:0051726
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00344 K04683 TFDP1; transcription factor Dp-1 - csv:101216863 637.491
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00344 Cpe-Chr1:1954446 Cpe14g00221 Cpe-Chr14:1255423 0 dispersed
Cpe01g00343 Cpe-Chr1:1952251 Cpe01g00344 Cpe-Chr1:1954446 1.52E-72 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe09g01047 CCT,CST 3 375 E2F-DP Transcription Factor Family AT3G48160 55.0 4.5e-103 372.1
Cpe20g00223 CCT 3 200 E2F-DP Transcription Factor Family AT3G48160 61.3 1.4e-59 227.6
Cpe20g00223 CCT 21 200 E2F-DP Transcription Factor Family AT3G01330 54.4 6.8e-47 185.3
Cpe01g00344 . 83 286 E2F-DP Transcription Factor Family AT5G02470 55.1 1.3e-59 227.3
Cpe05g00446 . 21 424 E2F-DP Transcription Factor Family AT2G36010 52.8 1.6e-110 397.1
Cpe10g00310 CCT,ECH 45 476 E2F-DP Transcription Factor Family AT2G36010 53.0 3.5e-110 396.0
Cpe19g00497 CCT,ECH 41 480 E2F-DP Transcription Factor Family AT2G36010 52.2 1.7e-109 393.7
Cpe05g00398 CCT,ECH 3 371 E2F-DP Transcription Factor Family AT2G36010 54.7 3.5e-102 369.4
Cpe05g00446 . 24 431 E2F-DP Transcription Factor Family AT5G22220 53.7 1.8e-103 373.6
Cpe05g00398 CCT,ECH 33 378 E2F-DP Transcription Factor Family AT5G22220 59.3 8.6e-98 354.8
Cpe07g00370 CCT 157 354 E2F-DP Transcription Factor Family AT5G22220 54.0 2.5e-49 193.7
Cpe11g00250 CCT 156 411 E2F-DP Transcription Factor Family AT1G47870 53.7 3.3e-66 249.6
Cpe05g00398 CCT,ECH 77 345 E2F-DP Transcription Factor Family AT1G47870 51.7 1.9e-61 233.8
Cpe07g00370 CCT 153 354 E2F-DP Transcription Factor Family AT1G47870 59.4 7.3e-58 221.9
Cpe01g00344 . 83 286 E2F-DP Transcription Factor Family AT5G02470 55.1 1.3e-59 227.3
Cpe05g00446 . 24 431 E2F-DP Transcription Factor Family AT5G22220 53.7 1.8e-103 373.6
Cpe05g00398 CCT,ECH 33 378 E2F-DP Transcription Factor Family AT5G22220 59.3 8.6e-98 354.8
Cpe07g00370 CCT 157 354 E2F-DP Transcription Factor Family AT5G22220 54.0 2.5e-49 193.7
Cpe05g00446 . 21 424 E2F-DP Transcription Factor Family AT2G36010 52.8 1.6e-110 397.1
Cpe10g00310 CCT,ECH 45 476 E2F-DP Transcription Factor Family AT2G36010 53.0 3.5e-110 396.0
Cpe19g00497 CCT,ECH 41 480 E2F-DP Transcription Factor Family AT2G36010 52.2 1.7e-109 393.7
Cpe05g00398 CCT,ECH 3 371 E2F-DP Transcription Factor Family AT2G36010 54.7 3.5e-102 369.4
Cpe11g00250 CCT 156 411 E2F-DP Transcription Factor Family AT1G47870 53.7 3.3e-66 249.6
Cpe05g00398 CCT,ECH 77 345 E2F-DP Transcription Factor Family AT1G47870 51.7 1.9e-61 233.8
Cpe07g00370 CCT 153 354 E2F-DP Transcription Factor Family AT1G47870 59.4 7.3e-58 221.9
Cpe20g00223 CCT 21 200 E2F-DP Transcription Factor Family AT3G01330 54.4 6.8e-47 185.3
Cpe09g01047 CCT,CST 3 375 E2F-DP Transcription Factor Family AT3G48160 55.0 4.5e-103 372.1
Cpe20g00223 CCT 3 200 E2F-DP Transcription Factor Family AT3G48160 61.3 1.4e-59 227.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004186 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 3 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48742 PF08781 DP 3.50E-41 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00344 Cpe_Chr01 FPKM 17.991335 20.946266 51.026634 50.105148 90.99585 100.564552 87.85392 63.516506 63.562092 61.987514