Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00346 ATGATGAAGCTGCAAACATATGCGGGAATTAGTTTCATTGCAACTATAGTGGTGATCTATCATGCCTTTAACAGTAGAGGCCAGTTCTACCCAGCGTTGGTCTATTTATCAACTTCCAAGATCAATCTAGTGCTTCTTCTCAACATGGGTTTAGTCCTCATGTGCATTTTGTGGCAGCTAACCAAAAAAATATTTCTTGGTTCCCTCCGAGAAGCAGAGGTTGAGAGGCTCAATGAGCAATCGTGGAAGGAGTTGATGGAAATCCTCTTTGCCATCACTATCTTTCGGCAAGATTTTTCTGTTGCATTCCTTGCTATGGTTACGGCTTTGTTATTGATCAAAGCTTTGCATTGGTTGGCTCAGAAGAGGGTTGAATACATGGAAACCACTCCATCGGTGCCGTTGTTGTCTCATATCCGGATTGTTTCTTTCTTGGGTTTTCTCTTTGTTCTAGATAGTCTGTTTTTGTATAATTCGATAGGTTCTCTGATACAGACAAGGAAGGCTTCAGTTTCCCTCTTCTTTTCATTTGAGTATATGATTCTTGCGACAACAGCCGTGTCAACATTTGTGAAATATATTTTCTATGTCAGTGATGTGCTCATGGAGGGACAATGGGAAAAAAAGCCTGTCTATACATTCTACTTGGAGCTTATCCGAGACTTGCTTCACTTGTCGATGTACTTGTGTTTCTTTCTTGTGATTTTCATGACATATGGCGTGCCTTTGCACTTGATCCGTGAGCTCTATGAGATCTTTAGGAATTTTAGGATTCGTATTGCAGATTACATTCGGTATAGAAAGATTACTTCAAACATGAATGATCGTTTCCCAGATGCAACACCTGAAGAACTCAATTCAAGTGATGCAACATGCATTATTTGTCGTGAAGAGATGACAGTTGCAAAGAAGCTAGTATGTGGACATCTTTTTCATGTCCATTGCCTCCGGTCCTGGTTGGAGCGACAACATACTTGTCCCACTTGCAGAGCCCTTGTTGTACCACCTGAAGGTTCAAGCACAGCAGGAGGTCATCAGGGATCGCAGTCTGATGCTAATCAACAAGGAACAGGAACCACAAGTTCATCTGCACAAGGTTCGGGTGGTACAGGTGCTGTTGGTGATAGTTTGAGTCATCATCAGGCTAGAGTCCAGGCTGCTGCTGCTGCTGCTTCAATATATGAGAAATCTTATGTTTATCCTTTTGCGAACACATTAGCATGGTCTCCTGGATACGCAGTTCAAAGACCTTTGCTTGACTCCAACAATGTAGAACCGATTGGAGAACAAGCTTCCAATGAACAAGCACAATATTTTCCATTTACAAGCGGCCCTGCAAACCTGTCCTTTACTCAAATTCCCCAAAATCTTTTTGTTCCTTTTCAGCCACGAGAGGGCACTGTAAACAATACGGATGGATTGGGCAGTAGTCAAAATACATCGGGCTCACAGCTTGAAGCTCAAGAAAGATTTCTTCAACAACAGATTGAGATCCTACAAGATCAGCTGCAACTTCTCCGTAAACTGAAAGTCGAAGATAGCTCAATAGCAGGCGAGGCAGACAAGAAAGGGAAAAGCATAGCATCATCGTCGCAGTCATCATCTTCATCAGTTTCAGATTCTCATCCACCCGGAGAAACCGAAAGGACGTGCGGGATTTTGGTTTGCGTTATGTCGGTGATGTTGCGTTCTTCGTCTTCTCTGTGGATAATTTTGGTGCTCCGGTTTGTTTCGCTGCTCTCTGCTAATCCTGAAGGCGATGCTTTGTATGCATTGAAGTCGAATTTACAAGATCCCAACAGCGTATTGCAGAGTTGGGATCCAACACTTGTTAATCCCTGCACTTGGTTTCATGTCACCTGTGACAACGTGAATACTGTCATTCGAGTTGATCTTGGAAATGCAAATCTATCTGGCACATTAGTTCCACAACTTGGTCAGCTTTCGAGTTTACAGGAACTCTATAGTAACAATATTAGTGGAGGAATTCCGGAGGAGCTTGGGGATTTGACAAACTTGGTGAGCTTGGATCTTTACTTGAACAATTTAACTGGTCACATACCCGTCACACTTGGCCAGCTTGATAATCTGCGTTTCCTGCGTCTTAACAACAACAGCTTGACAGGAACTATTCCAATGTCATTAACCAAAGTTAAATCCTTGCAAGTCCTGGATCTTTCATATAATCACCTAACTGGAGATATTCCGATCAATGGTTCTTTTTCTCTTTTTACCCCTATCAGTTTTGCTAACAATAATCTAAATGAGTCTGCCGTACGTCCTCCACCATCTCCTTTACCTTCTTCACCAACCCCCACATCAGCTGAAGAGGATCCAGAAGTTCATCTTGGTCAGCTTAAGAGGTTCTCTCTACGTGAACTACAAGTTGCTACGGATAATTTTAGCAACAAAAATATTCTAGGTAGAGGTGGTTTTGGCAAGGTCTATAAGGGACGTCTGGCTGATGGATCTCTAGTGGCAGTTAAAAGACTCAAAGAAGAACGTTCCCAGGGTGGGGAGCTGCAATTTCAAACAGAAGTTGAGATGATCAGCATGGCTGTGCATCGTAATCTTCTCCGCCTGCGTGGATTTTGTATGACGCCAACTGAGCGGGTGTTGGTCTATCCATATATGGTGAAAGGACTTCTAAAAGACAAGAGGCTTGAAACGCTAGTCGATCCCGATCTTGCGGGAAACTATCCTGACGATGAAGTCGAGCAGCTCATACAAGTTGCCTTGTTGTGCACACAAGGCACTCCTACCGAGCGGCCTAAGATGTCGGAGGTTGTACGGATGCTCGAGGGTGATGGCTTATCTGAAAGATGGGAAGAATGGCAGAAAGAGGATCGGTTCCAACAAGAAGTAAGCCGCAATCCCCACCCAAGTACTACTTGGATTCTCGACTCTACTGCTGAAATGCCTCCTGATGAACTGTCTGGTCCGAGATGA 2949 43.61 MMKLQTYAGISFIATIVVIYHAFNSRGQFYPALVYLSTSKINLVLLLNMGLVLMCILWQLTKKIFLGSLREAEVERLNEQSWKELMEILFAITIFRQDFSVAFLAMVTALLLIKALHWLAQKRVEYMETTPSVPLLSHIRIVSFLGFLFVLDSLFLYNSIGSLIQTRKASVSLFFSFEYMILATTAVSTFVKYIFYVSDVLMEGQWEKKPVYTFYLELIRDLLHLSMYLCFFLVIFMTYGVPLHLIRELYEIFRNFRIRIADYIRYRKITSNMNDRFPDATPEELNSSDATCIICREEMTVAKKLVCGHLFHVHCLRSWLERQHTCPTCRALVVPPEGSSTAGGHQGSQSDANQQGTGTTSSSAQGSGGTGAVGDSLSHHQARVQAAAAAASIYEKSYVYPFANTLAWSPGYAVQRPLLDSNNVEPIGEQASNEQAQYFPFTSGPANLSFTQIPQNLFVPFQPREGTVNNTDGLGSSQNTSGSQLEAQERFLQQQIEILQDQLQLLRKLKVEDSSIAGEADKKGKSIASSSQSSSSSVSDSHPPGETERTCGILVCVMSVMLRSSSSLWIILVLRFVSLLSANPEGDALYALKSNLQDPNSVLQSWDPTLVNPCTWFHVTCDNVNTVIRVDLGNANLSGTLVPQLGQLSSLQELYSNNISGGIPEELGDLTNLVSLDLYLNNLTGHIPVTLGQLDNLRFLRLNNNSLTGTIPMSLTKVKSLQVLDLSYNHLTGDIPINGSFSLFTPISFANNNLNESAVRPPPSPLPSSPTPTSAEEDPEVHLGQLKRFSLRELQVATDNFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERSQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERVLVYPYMVKGLLKDKRLETLVDPDLAGNYPDDEVEQLIQVALLCTQGTPTERPKMSEVVRMLEGDGLSERWEEWQKEDRFQQEVSRNPHPSTTWILDSTAEMPPDELSGPR 982
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1971042 1987109 + Cp4.1LG01g03290.1 Cpe01g00346 461659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00346 982 MobiDBLite consensus disorder prediction 341 374 - -
Cpe01g00346 982 MobiDBLite consensus disorder prediction 520 547 - -
Cpe01g00346 982 SMART ring_2 292 329 IPR001841 -
Cpe01g00346 982 SUPERFAMILY RING/U-box 272 336 - -
Cpe01g00346 982 MobiDBLite consensus disorder prediction 337 377 - -
Cpe01g00346 982 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 336 IPR013083 -
Cpe01g00346 982 MobiDBLite consensus disorder prediction 755 779 - -
Cpe01g00346 982 MobiDBLite consensus disorder prediction 525 544 - -
Cpe01g00346 982 Pfam Protein kinase domain 802 886 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g00346 982 SUPERFAMILY Protein kinase-like (PK-like) 769 886 IPR011009 -
Cpe01g00346 982 PANTHER RING ZINC FINGER PROTEIN 1 458 - -
Cpe01g00346 982 CDD RING-H2_synoviolin 289 330 - -
Cpe01g00346 982 CDD Prefoldin 484 512 - -
Cpe01g00346 982 Pfam Ring finger domain 291 330 IPR001841 -
Cpe01g00346 982 Pfam Leucine rich repeat N-terminal domain 582 622 IPR013210 -
Cpe01g00346 982 Gene3D Ribonuclease Inhibitor 582 760 IPR032675 -
Cpe01g00346 982 ProSiteProfiles Protein kinase domain profile. 801 982 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g00346 982 Gene3D Phosphorylase Kinase; domain 1 772 877 - -
Cpe01g00346 982 SUPERFAMILY L domain-like 584 757 - -
Cpe01g00346 982 ProSitePatterns Protein kinases ATP-binding region signature. 807 829 IPR017441 GO:0005524
Cpe01g00346 982 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
Cpe01g00346 982 MobiDBLite consensus disorder prediction 950 982 - -
Cpe01g00346 982 Coils Coil 482 509 - -
Cpe01g00346 982 PANTHER - 1 458 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00346 Cpe-Chr1:1971042 Cpe11g00021 Cpe-Chr11:117034 1.07E-109 dispersed
Cpe01g00474 Cpe-Chr1:2717526 Cpe01g00346 Cpe-Chr1:1971042 3.33E-24 dispersed
Cpe10g01018 Cpe-Chr10:5875735 Cpe01g00346 Cpe-Chr1:1971042 6.74E-12 dispersed
Cpe16g00120 Cpe-Chr16:2601023 Cpe01g00346 Cpe-Chr1:1971042 1.96E-66 dispersed
Cpe17g00830 Cpe-Chr17:6450331 Cpe01g00346 Cpe-Chr1:1971042 9.30E-24 dispersed
Cpe19g00170 Cpe-Chr19:1381119 Cpe01g00346 Cpe-Chr1:1971042 8.35E-11 dispersed
Cpe05g00668 Cpe-Chr5:4057495 Cpe01g00346 Cpe-Chr1:1971042 1.22E-19 transposed
Cpe06g00958 Cpe-Chr6:8196848 Cpe01g00346 Cpe-Chr1:1971042 1.13E-167 transposed
Cpe14g00220 Cpe-Chr14:1248225 Cpe01g00346 Cpe-Chr1:1971042 0 transposed
Cpe01g00346 Cpe-Chr1:1971042 Cpe14g00219 Cpe-Chr14:1241039 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62108 PF00069 Pkinase 1.70E-12 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00346 K10601 - csv:101215351 887.486