Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe01g00346 | ATGATGAAGCTGCAAACATATGCGGGAATTAGTTTCATTGCAACTATAGTGGTGATCTATCATGCCTTTAACAGTAGAGGCCAGTTCTACCCAGCGTTGGTCTATTTATCAACTTCCAAGATCAATCTAGTGCTTCTTCTCAACATGGGTTTAGTCCTCATGTGCATTTTGTGGCAGCTAACCAAAAAAATATTTCTTGGTTCCCTCCGAGAAGCAGAGGTTGAGAGGCTCAATGAGCAATCGTGGAAGGAGTTGATGGAAATCCTCTTTGCCATCACTATCTTTCGGCAAGATTTTTCTGTTGCATTCCTTGCTATGGTTACGGCTTTGTTATTGATCAAAGCTTTGCATTGGTTGGCTCAGAAGAGGGTTGAATACATGGAAACCACTCCATCGGTGCCGTTGTTGTCTCATATCCGGATTGTTTCTTTCTTGGGTTTTCTCTTTGTTCTAGATAGTCTGTTTTTGTATAATTCGATAGGTTCTCTGATACAGACAAGGAAGGCTTCAGTTTCCCTCTTCTTTTCATTTGAGTATATGATTCTTGCGACAACAGCCGTGTCAACATTTGTGAAATATATTTTCTATGTCAGTGATGTGCTCATGGAGGGACAATGGGAAAAAAAGCCTGTCTATACATTCTACTTGGAGCTTATCCGAGACTTGCTTCACTTGTCGATGTACTTGTGTTTCTTTCTTGTGATTTTCATGACATATGGCGTGCCTTTGCACTTGATCCGTGAGCTCTATGAGATCTTTAGGAATTTTAGGATTCGTATTGCAGATTACATTCGGTATAGAAAGATTACTTCAAACATGAATGATCGTTTCCCAGATGCAACACCTGAAGAACTCAATTCAAGTGATGCAACATGCATTATTTGTCGTGAAGAGATGACAGTTGCAAAGAAGCTAGTATGTGGACATCTTTTTCATGTCCATTGCCTCCGGTCCTGGTTGGAGCGACAACATACTTGTCCCACTTGCAGAGCCCTTGTTGTACCACCTGAAGGTTCAAGCACAGCAGGAGGTCATCAGGGATCGCAGTCTGATGCTAATCAACAAGGAACAGGAACCACAAGTTCATCTGCACAAGGTTCGGGTGGTACAGGTGCTGTTGGTGATAGTTTGAGTCATCATCAGGCTAGAGTCCAGGCTGCTGCTGCTGCTGCTTCAATATATGAGAAATCTTATGTTTATCCTTTTGCGAACACATTAGCATGGTCTCCTGGATACGCAGTTCAAAGACCTTTGCTTGACTCCAACAATGTAGAACCGATTGGAGAACAAGCTTCCAATGAACAAGCACAATATTTTCCATTTACAAGCGGCCCTGCAAACCTGTCCTTTACTCAAATTCCCCAAAATCTTTTTGTTCCTTTTCAGCCACGAGAGGGCACTGTAAACAATACGGATGGATTGGGCAGTAGTCAAAATACATCGGGCTCACAGCTTGAAGCTCAAGAAAGATTTCTTCAACAACAGATTGAGATCCTACAAGATCAGCTGCAACTTCTCCGTAAACTGAAAGTCGAAGATAGCTCAATAGCAGGCGAGGCAGACAAGAAAGGGAAAAGCATAGCATCATCGTCGCAGTCATCATCTTCATCAGTTTCAGATTCTCATCCACCCGGAGAAACCGAAAGGACGTGCGGGATTTTGGTTTGCGTTATGTCGGTGATGTTGCGTTCTTCGTCTTCTCTGTGGATAATTTTGGTGCTCCGGTTTGTTTCGCTGCTCTCTGCTAATCCTGAAGGCGATGCTTTGTATGCATTGAAGTCGAATTTACAAGATCCCAACAGCGTATTGCAGAGTTGGGATCCAACACTTGTTAATCCCTGCACTTGGTTTCATGTCACCTGTGACAACGTGAATACTGTCATTCGAGTTGATCTTGGAAATGCAAATCTATCTGGCACATTAGTTCCACAACTTGGTCAGCTTTCGAGTTTACAGGAACTCTATAGTAACAATATTAGTGGAGGAATTCCGGAGGAGCTTGGGGATTTGACAAACTTGGTGAGCTTGGATCTTTACTTGAACAATTTAACTGGTCACATACCCGTCACACTTGGCCAGCTTGATAATCTGCGTTTCCTGCGTCTTAACAACAACAGCTTGACAGGAACTATTCCAATGTCATTAACCAAAGTTAAATCCTTGCAAGTCCTGGATCTTTCATATAATCACCTAACTGGAGATATTCCGATCAATGGTTCTTTTTCTCTTTTTACCCCTATCAGTTTTGCTAACAATAATCTAAATGAGTCTGCCGTACGTCCTCCACCATCTCCTTTACCTTCTTCACCAACCCCCACATCAGCTGAAGAGGATCCAGAAGTTCATCTTGGTCAGCTTAAGAGGTTCTCTCTACGTGAACTACAAGTTGCTACGGATAATTTTAGCAACAAAAATATTCTAGGTAGAGGTGGTTTTGGCAAGGTCTATAAGGGACGTCTGGCTGATGGATCTCTAGTGGCAGTTAAAAGACTCAAAGAAGAACGTTCCCAGGGTGGGGAGCTGCAATTTCAAACAGAAGTTGAGATGATCAGCATGGCTGTGCATCGTAATCTTCTCCGCCTGCGTGGATTTTGTATGACGCCAACTGAGCGGGTGTTGGTCTATCCATATATGGTGAAAGGACTTCTAAAAGACAAGAGGCTTGAAACGCTAGTCGATCCCGATCTTGCGGGAAACTATCCTGACGATGAAGTCGAGCAGCTCATACAAGTTGCCTTGTTGTGCACACAAGGCACTCCTACCGAGCGGCCTAAGATGTCGGAGGTTGTACGGATGCTCGAGGGTGATGGCTTATCTGAAAGATGGGAAGAATGGCAGAAAGAGGATCGGTTCCAACAAGAAGTAAGCCGCAATCCCCACCCAAGTACTACTTGGATTCTCGACTCTACTGCTGAAATGCCTCCTGATGAACTGTCTGGTCCGAGATGA | 2949 | 43.61 | MMKLQTYAGISFIATIVVIYHAFNSRGQFYPALVYLSTSKINLVLLLNMGLVLMCILWQLTKKIFLGSLREAEVERLNEQSWKELMEILFAITIFRQDFSVAFLAMVTALLLIKALHWLAQKRVEYMETTPSVPLLSHIRIVSFLGFLFVLDSLFLYNSIGSLIQTRKASVSLFFSFEYMILATTAVSTFVKYIFYVSDVLMEGQWEKKPVYTFYLELIRDLLHLSMYLCFFLVIFMTYGVPLHLIRELYEIFRNFRIRIADYIRYRKITSNMNDRFPDATPEELNSSDATCIICREEMTVAKKLVCGHLFHVHCLRSWLERQHTCPTCRALVVPPEGSSTAGGHQGSQSDANQQGTGTTSSSAQGSGGTGAVGDSLSHHQARVQAAAAAASIYEKSYVYPFANTLAWSPGYAVQRPLLDSNNVEPIGEQASNEQAQYFPFTSGPANLSFTQIPQNLFVPFQPREGTVNNTDGLGSSQNTSGSQLEAQERFLQQQIEILQDQLQLLRKLKVEDSSIAGEADKKGKSIASSSQSSSSSVSDSHPPGETERTCGILVCVMSVMLRSSSSLWIILVLRFVSLLSANPEGDALYALKSNLQDPNSVLQSWDPTLVNPCTWFHVTCDNVNTVIRVDLGNANLSGTLVPQLGQLSSLQELYSNNISGGIPEELGDLTNLVSLDLYLNNLTGHIPVTLGQLDNLRFLRLNNNSLTGTIPMSLTKVKSLQVLDLSYNHLTGDIPINGSFSLFTPISFANNNLNESAVRPPPSPLPSSPTPTSAEEDPEVHLGQLKRFSLRELQVATDNFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERSQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERVLVYPYMVKGLLKDKRLETLVDPDLAGNYPDDEVEQLIQVALLCTQGTPTERPKMSEVVRMLEGDGLSERWEEWQKEDRFQQEVSRNPHPSTTWILDSTAEMPPDELSGPR | 982 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 1971042 | 1987109 | + | Cp4.1LG01g03290.1 | Cpe01g00346 | 461659 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe01g00346 | 982 | MobiDBLite | consensus disorder prediction | 341 | 374 | - | - | |
Cpe01g00346 | 982 | MobiDBLite | consensus disorder prediction | 520 | 547 | - | - | |
Cpe01g00346 | 982 | SMART | ring_2 | 292 | 329 | IPR001841 | - | |
Cpe01g00346 | 982 | SUPERFAMILY | RING/U-box | 272 | 336 | - | - | |
Cpe01g00346 | 982 | MobiDBLite | consensus disorder prediction | 337 | 377 | - | - | |
Cpe01g00346 | 982 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 264 | 336 | IPR013083 | - | |
Cpe01g00346 | 982 | MobiDBLite | consensus disorder prediction | 755 | 779 | - | - | |
Cpe01g00346 | 982 | MobiDBLite | consensus disorder prediction | 525 | 544 | - | - | |
Cpe01g00346 | 982 | Pfam | Protein kinase domain | 802 | 886 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cpe01g00346 | 982 | SUPERFAMILY | Protein kinase-like (PK-like) | 769 | 886 | IPR011009 | - | |
Cpe01g00346 | 982 | PANTHER | RING ZINC FINGER PROTEIN | 1 | 458 | - | - | |
Cpe01g00346 | 982 | CDD | RING-H2_synoviolin | 289 | 330 | - | - | |
Cpe01g00346 | 982 | CDD | Prefoldin | 484 | 512 | - | - | |
Cpe01g00346 | 982 | Pfam | Ring finger domain | 291 | 330 | IPR001841 | - | |
Cpe01g00346 | 982 | Pfam | Leucine rich repeat N-terminal domain | 582 | 622 | IPR013210 | - | |
Cpe01g00346 | 982 | Gene3D | Ribonuclease Inhibitor | 582 | 760 | IPR032675 | - | |
Cpe01g00346 | 982 | ProSiteProfiles | Protein kinase domain profile. | 801 | 982 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cpe01g00346 | 982 | Gene3D | Phosphorylase Kinase; domain 1 | 772 | 877 | - | - | |
Cpe01g00346 | 982 | SUPERFAMILY | L domain-like | 584 | 757 | - | - | |
Cpe01g00346 | 982 | ProSitePatterns | Protein kinases ATP-binding region signature. | 807 | 829 | IPR017441 | GO:0005524 | |
Cpe01g00346 | 982 | ProSiteProfiles | Zinc finger RING-type profile. | 292 | 330 | IPR001841 | - | |
Cpe01g00346 | 982 | MobiDBLite | consensus disorder prediction | 950 | 982 | - | - | |
Cpe01g00346 | 982 | Coils | Coil | 482 | 509 | - | - | |
Cpe01g00346 | 982 | PANTHER | - | 1 | 458 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g00346 | Cpe-Chr1:1971042 | Cpe11g00021 | Cpe-Chr11:117034 | 1.07E-109 | dispersed | |
Cpe01g00474 | Cpe-Chr1:2717526 | Cpe01g00346 | Cpe-Chr1:1971042 | 3.33E-24 | dispersed | |
Cpe10g01018 | Cpe-Chr10:5875735 | Cpe01g00346 | Cpe-Chr1:1971042 | 6.74E-12 | dispersed | |
Cpe16g00120 | Cpe-Chr16:2601023 | Cpe01g00346 | Cpe-Chr1:1971042 | 1.96E-66 | dispersed | |
Cpe17g00830 | Cpe-Chr17:6450331 | Cpe01g00346 | Cpe-Chr1:1971042 | 9.30E-24 | dispersed | |
Cpe19g00170 | Cpe-Chr19:1381119 | Cpe01g00346 | Cpe-Chr1:1971042 | 8.35E-11 | dispersed | |
Cpe05g00668 | Cpe-Chr5:4057495 | Cpe01g00346 | Cpe-Chr1:1971042 | 1.22E-19 | transposed | |
Cpe06g00958 | Cpe-Chr6:8196848 | Cpe01g00346 | Cpe-Chr1:1971042 | 1.13E-167 | transposed | |
Cpe14g00220 | Cpe-Chr14:1248225 | Cpe01g00346 | Cpe-Chr1:1971042 | 0 | transposed | |
Cpe01g00346 | Cpe-Chr1:1971042 | Cpe14g00219 | Cpe-Chr14:1241039 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
62108 | PF00069 | Pkinase | 1.70E-12 | CL0016 | Cpe | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe01g00346 | K10601 | - | csv:101215351 | 887.486 |