Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe01g00354 | ATGGATAACTTATGCTGCTTCAATTCTGTGTACTCTCAGTTTGTAGGAGGACGTTCGTCATGTAGCTCCGGAAAGGGCCGGGGCAATCAATGCCCTGCGAAATATGGTTTTAGTTTGGTAAAAGGCAAGGCAAATCATCCCATGGAAGATTATCATGTTGCTAAATTTATCACAGTGCATGGCCTGGAGCTTGGCCTCTTTGCTATATATGATGGGCACCTAGGAGATAGCGTACCAGCCTATCTACAGAAGCATCTATTTCCCAATATTCTCAAGGATGAGGAATTCTGGTCGAATCCGCGTAGCTCTATCTTTAAGGCGTATGAGACGACAGACCAAGCGATACTCTCACACAGTCCTGACTTGGGAAGAGGTGGATCCACTGCTGTCACTGCAATTTTAATAAACGGTCAAAAATTATGGGTGGCTAATGTCGGAGATTCACGAGCAGTCCTTTCGAAAAGAGGGCAGGAAGTACAAATGTCTGTCGATCACGAACCGAACACTGAGCGAGGAAGTATTGAGGACAGAGGTGGCTTTGTCTCTAACATGCCAGGAGATGTTGCTAGAGTGAACGGGCAGCTCGCAGTTTCTCGAGCATTTGGCGACAAGAACCTCAAAACACACTTACGATCTGATCCCGACATAAAGAACGCCGATATCAACTCTGACACCGAGCTTCTAATCTTAGCAAGCGACGGTCTATGGAAGGTCATGTCGAATCAAGAAGCCGTGGACATAGCGAGAAGAACCAAAGATCCCCAGAGGGCAGCAAAGCAACTAGCAGCAGAAGCACTGAAACGGGAAAGCAAAGACGACATCTCGATCATCGTCGTTCGTTTCAAAGGGTAA | 852 | 46.83 | MDNLCCFNSVYSQFVGGRSSCSSGKGRGNQCPAKYGFSLVKGKANHPMEDYHVAKFITVHGLELGLFAIYDGHLGDSVPAYLQKHLFPNILKDEEFWSNPRSSIFKAYETTDQAILSHSPDLGRGGSTAVTAILINGQKLWVANVGDSRAVLSKRGQEVQMSVDHEPNTERGSIEDRGGFVSNMPGDVARVNGQLAVSRAFGDKNLKTHLRSDPDIKNADINSDTELLILASDGLWKVMSNQEAVDIARRTKDPQRAAKQLAAEALKRESKDDISIIVVRFKG | 283 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 2039516 | 2043551 | + | Cp4.1LG01g03110.1 | Cpe01g00354 | 461667 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe01g00354 | 283 | CDD | PP2Cc | 34 | 281 | IPR001932 | - | |
| Cpe01g00354 | 283 | Gene3D | - | 30 | 283 | IPR036457 | - | |
| Cpe01g00354 | 283 | Pfam | Protein phosphatase 2C | 43 | 274 | IPR001932 | - | |
| Cpe01g00354 | 283 | PANTHER | PHOSPHATASE 2C FAMILY PROTEIN | 1 | 282 | - | - | |
| Cpe01g00354 | 283 | SUPERFAMILY | PP2C-like | 31 | 282 | IPR036457 | - | |
| Cpe01g00354 | 283 | SMART | PP2C_4 | 30 | 279 | IPR001932 | - | |
| Cpe01g00354 | 283 | PANTHER | PROTEIN PHOSPHATASE 2C | 1 | 282 | IPR015655 | GO:0004722|GO:0006470 | |
| Cpe01g00354 | 283 | ProSiteProfiles | PPM-type phosphatase domain profile. | 34 | 281 | IPR001932 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe01g00354 | Cpe-Chr1:2039516 | Cpe06g00424 | Cpe-Chr6:2422845 | 2.38E-97 | dispersed | |
| Cpe02g00373 | Cpe-Chr2:2056433 | Cpe01g00354 | Cpe-Chr1:2039516 | 3.34E-156 | transposed | |
| Cpe01g00354 | Cpe-Chr1:2039516 | Cpe14g00210 | Cpe-Chr14:1175110 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe01g00354 | K17506 | - | csv:101214223 | 538.88 |