Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00370 ATGGAGCGAAGAAAAAAAGGAATGGGAAGAGGGAAGATTGTGATAAGACGAATAGACAATTCAACGAGCAGACAAGTGACGTTCTCAAAGAGAAGAAATGGATTGCTGAAGAAAGCTCGAGAGCTTTCAATCCTTTGCGACGCCGAAGTTGGATTGATCGTTTTCTCAAGCACAGGAAAGCTCTATGATTATTCCACCACCAGCATAAGATCAATTACCGATCGTTACTACAAGGTGAAAGAGGAGCAAAATCAGCTGATGAACTCTGTTTCAGAACTCCAGTTTTGGAAAAGAGAGGCAGCTGCTTTGAAGCAACAACTGCATTACTTGCAAGAATGTCACAGACAATTGATGGGCGAAGAACTATCTGGCCTGAGTGTCAAAGATCTACAAAATCTAGAAAGCAAGTTGGAAATGAGCTTGAAAGGTGTCCGTGTAGAAAAGGAAAAGATTTTAAGGGATGAAATTACGGAACTAAGACAGAAGGGGAATCATATGCATCAAGAAAATGTGGAACTATACAAGAAATTAGATATGATTCACAAGGAAAATGCAGAACTGCAAATGAAGGTTTATGGACCAATGGAAGTGGATAAAACGAGCAGTAGCTCAACTCAACAATTCACTATCACCAATAGATACAGTATGCCTGCTCTACAGCTAAGACAGCCACAACCACAAAACAGTGAAACATCAGTACCAGGGATAAAGCTGGGATTGCAACTGCAATAA 732 40.44 MERRKKGMGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGLIVFSSTGKLYDYSTTSIRSITDRYYKVKEEQNQLMNSVSELQFWKREAAALKQQLHYLQECHRQLMGEELSGLSVKDLQNLESKLEMSLKGVRVEKEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITNRYSMPALQLRQPQPQNSETSVPGIKLGLQLQ 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2125778 2134856 + Cp4.1LG01g02990.1 Cpe01g00370 461683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00370 243 CDD MADS_MEF2_like 9 83 IPR033896 GO:0000977|GO:0045944
Cpe01g00370 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Cpe01g00370 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 8 243 - -
Cpe01g00370 243 Coils Coil 79 106 - -
Cpe01g00370 243 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Cpe01g00370 243 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Cpe01g00370 243 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Cpe01g00370 243 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Cpe01g00370 243 Pfam K-box region 91 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe01g00370 243 Gene3D - 20 100 IPR036879 GO:0003677|GO:0046983
Cpe01g00370 243 PANTHER - 8 243 - -
Cpe01g00370 243 ProSitePatterns MADS-box domain signature. 10 64 IPR002100 GO:0003677|GO:0046983
Cpe01g00370 243 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Cpe01g00370 243 MobiDBLite consensus disorder prediction 221 243 - -
Cpe01g00370 243 SUPERFAMILY SRF-like 9 97 IPR036879 GO:0003677|GO:0046983
Cpe01g00370 243 ProSiteProfiles K-box domain profile. 93 183 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g00370 Cpe14g00230 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00370 Cpe-Chr1:2125778 Cpe02g00486 Cpe-Chr2:2793523 1.99E-91 dispersed
Cpe06g00461 Cpe-Chr6:2701913 Cpe01g00370 Cpe-Chr1:2125778 1.03E-23 dispersed
Cpe06g00463 Cpe-Chr6:2711981 Cpe01g00370 Cpe-Chr1:2125778 9.35E-42 dispersed
Cpe01g00370 Cpe-Chr1:2125778 Cpe10g00528 Cpe-Chr10:3096610 6.28E-75 wgd
Cpe01g00370 Cpe-Chr1:2125778 Cpe14g00230 Cpe-Chr14:1323554 6.43E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48743 PF01486 K-box 3.50E-25 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00370 K09264 - csv:101203098 406.371