Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00380 TTCCATCTCTATATAAATTCTTCCCTTATTCTCAATCTTCATCTCATCTCTCATCGGAATTATGTGGACTCAAACCCCTCCGATCATGGCCGCTTTCATTGCCACTTTCATGTCGGCGTCGGCCCCATGCAATGGAGCAACACCGTGGCCGCGTACGCTCAAACCTATGCGGAAAAAAGAAAGGGTGACTGTGCCATGATTCACTCAACCGGACCGTATGGTGAAAACATAGCTGCGGGGTACTACCCTGAGTTCACTGGGGTGGATGCAGTGAAGTTGTGGGCAAAAGAGAAGCCGTTGTATGATTATGCATCGAATAAATGCGTGGGTGGTGAATGTGGGCACTACACTCAGATGGTGTGGCGAAGCTCGGTGCGACTTGGATGTGCTAGAGTGCCCTGTAAGGGTAATTCTCAGTTTGTTATCATGGCCGCTTTCATTGCCACTTTCATGTTCGTCCTCGCCTTAACCAACGCTCAAAACGCCCCCCGTGACTACCTCGCACTTCACAATCGCGTTCGAGCTCAGGTCGGCGTCGGCCCCATGCAATGGAGCAACACCGTGGCTGCGTACGCTCAAACCTATGCAGAAAAAAGAAAGGGTGATTGTGCCATGATTCACTCAACCGGGCTGTATGGGGAAAACATAGCCGCTGGGTTCTACCCTGAGTTCACTGGGGTGGATGCAGTGAAGCTATGGGCGAATGAGAAGCCGTTGTATGATTATGCATCGAATAAATGCGTGGGTGGTGAATGTGGGCACTACACTCAGATGGTGTGGCGAAGCTCGGTGCGGCTTGGATGTGCTAGAGTGCCCTGTAAGGGTAATTCTCAGTTTGTTGTTTGCAATTATGATCCTCCTGGCAACTATATTGGGGAAAAGCCTTATGATTCTTTG 897 50.17 FHLYINSSLILNLHLISHRNYVDSNPSDHGRFHCHFHVGVGPMQWSNTVAAYAQTYAEKRKGDCAMIHSTGPYGENIAAGYYPEFTGVDAVKLWAKEKPLYDYASNKCVGGECGHYTQMVWRSSVRLGCARVPCKGNSQFVIMAAFIATFMFVLALTNAQNAPRDYLALHNRVRAQVGVGPMQWSNTVAAYAQTYAEKRKGDCAMIHSTGLYGENIAAGFYPEFTGVDAVKLWANEKPLYDYASNKCVGGECGHYTQMVWRSSVRLGCARVPCKGNSQFVVCNYDPPGNYIGEKPYDSL 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2196405 2198904 + Cp4.1LG01g02850.1 Cpe01g00380 461693

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00380 299 ProSitePatterns CRISP family signature 2. 279 290 IPR018244 GO:0005576
Cpe01g00380 299 ProSitePatterns CRISP family signature 1. 253 263 IPR018244 GO:0005576
Cpe01g00380 299 CDD CAP_PR-1 163 296 - -
Cpe01g00380 299 ProSitePatterns CRISP family signature 1. 114 124 IPR018244 GO:0005576
Cpe01g00380 299 PRINTS Allergen V5/Tpx-1 family signature 43 61 IPR001283 -
Cpe01g00380 299 PRINTS Allergen V5/Tpx-1 family signature 229 242 IPR001283 -
Cpe01g00380 299 PRINTS Allergen V5/Tpx-1 family signature 279 292 IPR001283 -
Cpe01g00380 299 PRINTS Allergen V5/Tpx-1 family signature 252 268 IPR001283 -
Cpe01g00380 299 CDD CAP_PR-1 37 143 - -
Cpe01g00380 299 Pfam Cysteine-rich secretory protein family 167 284 IPR014044 -
Cpe01g00380 299 Pfam Cysteine-rich secretory protein family 39 143 IPR014044 -
Cpe01g00380 299 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 17 142 IPR001283 -
Cpe01g00380 299 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 154 296 IPR001283 -
Cpe01g00380 299 SUPERFAMILY PR-1-like 154 297 IPR035940 -
Cpe01g00380 299 SMART SCP_3 24 155 IPR014044 -
Cpe01g00380 299 SMART SCP_3 161 292 IPR014044 -
Cpe01g00380 299 PANTHER PATHOGENESIS-RELATED PROTEIN 1 154 296 - -
Cpe01g00380 299 PANTHER PATHOGENESIS-RELATED PROTEIN 1 17 142 - -
Cpe01g00380 299 Gene3D CAP 156 298 IPR035940 -
Cpe01g00380 299 Gene3D CAP 13 147 IPR035940 -
Cpe01g00380 299 SUPERFAMILY PR-1-like 38 142 IPR035940 -
Cpe01g00380 299 PRINTS Venom allergen 5 signature 251 270 IPR002413 -
Cpe01g00380 299 PRINTS Venom allergen 5 signature 182 200 IPR002413 -
Cpe01g00380 299 PRINTS Venom allergen 5 signature 227 242 IPR002413 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00380 K13449 PR1; pathogenesis-related protein 1 - zju:107413742 293.123
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g00380 Cpe15g00420 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00380 Cpe-Chr1:2196405 Cpe01g01781 Cpe-Chr1:14056222 5.74E-69 dispersed
Cpe01g00380 Cpe-Chr1:2196405 Cpe15g00415 Cpe-Chr15:5303878 7.98E-28 wgd
Cpe01g00380 Cpe-Chr1:2196405 Cpe04g00339 Cpe-Chr4:4114922 3.45E-41 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g799 Blo02g00914 . Bda06g01146 . Bpe07g00300 . . Bma12g00312 Cmo19g00541 . . . . . . . Cpe15g00420 . . . . . . . Cla02g00709 Cam02g0746 Cec02g0757 Cco02g0784 Clacu02g0752 Cmu02g0746 Cre02g1061 . Cone8ag1053 . . Lsi03g00626 Csa07g00658 . Cme01g00144 . . . . . Bpe05g00458 . . . . . Cma11g01690 Cma19g00532 . . . Cpe01g00380 . . . . . . . . . . . . . . . . Chy01g00153 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0023599 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00380 Cpe_Chr01 FPKM 0.917051 0.556207 0.0 0.0 0.0 0.0 0.301582 0.0 0.0 0.0