Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00381 ATGTTGAAGAAATCGTCAAGTCGGAGCAACAGGTCGAAAGGCATCAAGGTGAAGCATATTCTGCAGATTGTTCTGTTGGTTGGTGTTTGCTTTTGGTTAATTTATCAGGTAAAACGCTCCCATGACAAGAAGAAAGAATTTGACCAGAAGGATAATGAAGTGATAAAAACTCAGGATGGTGTTGATGTTTTGAAACTCGGAAGGAAAGACCTTCACCCCCATGTTGAGGAAGTTCATCCCGGTGAGAAGCAGGAGGAAGACGAGGAAGAAGAGGTGGGAGGTGAGGAAGAAGACTCGAAGCATGAGGAGGGAGAAGAGGGTCATGAAGAACTGAAAAACGAGGCAGTCAATGAAAAGGATGAAGGAAGCAAGCATGAAGAGGAGACCGATGACGACGGGAGAGGAGGAGGCGATGATGACATAGATGAGAATGATCAAGAGAAGGCAGATAATGAAACCGATCATGAAAGTGAGAATGTCGACGACGAGAGATTGAATGAAGACAGCGATGAGGAGGCGGGAGGAAATGAAGAGAGGGATAAGGAGGAGCAAAAAGAAAACGAGAATTCTTCCGATGAGCAGGAGAATGACGGTGGCGACCAACGCAATCACGAGGCACGTGAGGAAAACTACAAGGGAGATGATGCTTCTAGTGCAGTCGCCCATGATGATGACCACTCTACCACCTCACAGACAGAGGAAGTGAATTTGGAGAATTCAAATGAAAACTTGGAGCTGCGAAACAAAGAACAGGAAGGTGAATCTATCGACACCGAGGAATTTAAACGGATTCACAACAGTTCACAGTTAACTGAGGAAGTTGATAAAATGGCTGACAATGGAACTTCAACCAACGAGAACCCGAGTAATGTGAAGTTGAACGAAAACACGTACCTACCTACTGATGGTTCAGTTCAAAACTCAACCCTGACTACTCAATCCATTGATCAACCCGAACTTAGCGATAATTCGTCCTCTGCAACAACTGAGACAAATAAGGTAGAGAATGCTGATTCTTCCCAGCAGAATGGATTGGAAATTGGTTTGAATCATGCTCAAAACGAAACCATAGAGAATTTGACTGCTCAGAATGAAACATCTCTTCACTCGTCGATGCCTACAAATTTGAACGACACGGTTTTGGAGAACAACCAGTCTGAATCTCAGTCTAACACTACCAGTATAGATGAAAATTCAAATGGGGTTGAAGGCAAGACCTTGAATATCACTAGTGAGGCAGGTCTTACTGTTACAGATGACAAAACGACCAAACCAGAGAAAGACGACAAAGCGACTGAACCGGAGAATGTTTTGCCCACCATGAAAACCCAGGAGAACAATGAAACTACTCAGAATGAGAAGCCGGAAGATACTGTCGAGAACAGTGAAACTACTCGGAATGAGAAGCCGGAAGATACTGGCGAGAACAGTGAAACTACTCGGAATGAGACGCTGGAAGATACTGGCAAGAACAGTGAAACTACTCAGAATGAGAAGCCGGAAATTACTGGCGAGAACAGTGAAACTACTCCGAATGAGAAGCTGGAAGACGATGGCGAATCCAATGGCGATAGCTCTGATCCAGCAAATCATACCGAAGACCCAGTTCATGAAGATCCAATCGATTCGAACGACTCCCATGTAACCGAACGTGTTGATCTGGATACATTACCGGATATTAGAACCGGGGTTGACCACGGTGACGAGGCTGCAGCAGAATGA 1722 44.83 MLKKSSSRSNRSKGIKVKHILQIVLLVGVCFWLIYQVKRSHDKKKEFDQKDNEVIKTQDGVDVLKLGRKDLHPHVEEVHPGEKQEEDEEEEVGGEEEDSKHEEGEEGHEELKNEAVNEKDEGSKHEEETDDDGRGGGDDDIDENDQEKADNETDHESENVDDERLNEDSDEEAGGNEERDKEEQKENENSSDEQENDGGDQRNHEAREENYKGDDASSAVAHDDDHSTTSQTEEVNLENSNENLELRNKEQEGESIDTEEFKRIHNSSQLTEEVDKMADNGTSTNENPSNVKLNENTYLPTDGSVQNSTLTTQSIDQPELSDNSSSATTETNKVENADSSQQNGLEIGLNHAQNETIENLTAQNETSLHSSMPTNLNDTVLENNQSESQSNTTSIDENSNGVEGKTLNITSEAGLTVTDDKTTKPEKDDKATEPENVLPTMKTQENNETTQNEKPEDTVENSETTRNEKPEDTGENSETTRNETLEDTGKNSETTQNEKPEITGENSETTPNEKLEDDGESNGDSSDPANHTEDPVHEDPIDSNDSHVTERVDLDTLPDIRTGVDHGDEAAAE 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2201972 2203693 + Cp4.1LG01g02830.1 Cpe01g00381 461694

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00381 573 MobiDBLite consensus disorder prediction 495 509 - -
Cpe01g00381 573 PANTHER MYB-LIKE PROTEIN X 441 573 - -
Cpe01g00381 573 PANTHER MYB-LIKE PROTEIN X 1 499 - -
Cpe01g00381 573 MobiDBLite consensus disorder prediction 449 494 - -
Cpe01g00381 573 Coils Coil 101 128 - -
Cpe01g00381 573 MobiDBLite consensus disorder prediction 530 573 - -
Cpe01g00381 573 MobiDBLite consensus disorder prediction 243 272 - -
Cpe01g00381 573 MobiDBLite consensus disorder prediction 148 162 - -
Cpe01g00381 573 MobiDBLite consensus disorder prediction 104 131 - -
Cpe01g00381 573 MobiDBLite consensus disorder prediction 56 573 - -
Cpe01g00381 573 MobiDBLite consensus disorder prediction 82 103 - -
Cpe01g00381 573 MobiDBLite consensus disorder prediction 273 418 - -
Cpe01g00381 573 MobiDBLite consensus disorder prediction 163 177 - -
Cpe01g00381 573 MobiDBLite consensus disorder prediction 132 147 - -
Cpe01g00381 573 MobiDBLite consensus disorder prediction 178 231 - -
Cpe01g00381 573 PANTHER MYB-LIKE PROTEIN X 1 499 - -
Cpe01g00381 573 PANTHER MYB-LIKE PROTEIN X 441 573 - -
Cpe01g00381 573 Coils Coil 232 254 - -
Cpe01g00381 573 MobiDBLite consensus disorder prediction 419 435 - -
Cpe01g00381 573 MobiDBLite consensus disorder prediction 56 81 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00381 - - - cmos:111447409 949.118
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g00381 Cpe14g00247 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00381 Cpe-Chr1:2201972 Cpe19g00704 Cpe-Chr19:5526508 1.01E-21 dispersed
Cpe01g00381 Cpe-Chr1:2201972 Cpe10g00511 Cpe-Chr10:3006200 1.26E-21 wgd
Cpe01g00381 Cpe-Chr1:2201972 Cpe14g00247 Cpe-Chr14:1434932 1.18E-168 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g787 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1052 Cone10ag1070 . . . . . . . . . . . . Sed07g1153 . Cmo16g00317 . . . . Cpe14g00247 Cpe01g00381 Bhi11g01093 Tan01g0597 Cmetu07g1866 . Hepe07g0387 Mch10g0400 . . . . . . . . . . . Cme07g02218
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001422 2 2 3 1 1 2 4 2 2 3 2 2 4 1 0 3 2 4 4 2 1 2 2 2 2 2 2 5 3 1 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00381 Cpe_Chr01 FPKM 0.0 0.0 1.415429 1.218142 0.0 0.0 0.451409 1.610204 2.029874 2.289813