Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe01g00383 | ATGAGGAAGAGTAGAGGCAGGCAAAAGGTTGAGATGGTCAAGATGCCTAATGAGAGCAACCTCCAAGTCACCTTCTCCAAGCGTCGCTCCGGCCTCTTCAAGAAAGCTAGCGAGCTCTGCACCCTTTGCGGTGCCGAGATTGCCATCATCGTCTTCTCCCCCGGGAAGAAAGTCTTCTCCTTTGGTCACCCTTGTGTCGAGGCTCTTATTGAACGCTTCGTCACTCGAAACCCTCCACCGAGCTCTGGTACACTTCAATTGATCGAAGCTCATCGGAATGCTAATGTTCGTGAACTAAATGCACAATTGACTCAAGTGTTGAACCATTTGGAGATGGAGCGGAAACGGGGCGAGGAGTTGAATAAATTACGAAAGGCTAATCAGCCGCAATGTTGGTGGGAGCTTCCTATCGAAGAAATGGAATTGCATCAACTCGAACAACTTAAATTGTCGTTGGACGAGCTAAAAAAGAATGTTACGCAACAAGCTGATCGGATTTTGATTCAAACCTCCAATGGCAACCCGCCCCCGCAATTCTTCCCGACTCCGACGCCTGCAAACCCAAACCAACAAGGCGGTGTCTATGTCGTCGATCAGAAGAACATGATCTCTCATCTTCCCTACAACTATGGCTCCTATGGATCAAGAGGTTTCTTTTGA | 660 | 48.33 | MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSFGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNHLEMERKRGEELNKLRKANQPQCWWELPIEEMELHQLEQLKLSLDELKKNVTQQADRILIQTSNGNPPPQFFPTPTPANPNQQGGVYVVDQKNMISHLPYNYGSYGSRGFF | 219 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 2209097 | 2209833 | - | Cp4.1LG01g02710.1 | Cpe01g00383 | 461696 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe01g00383 | 219 | PANTHER | MADS BOX PROTEIN | 5 | 177 | - | - | |
Cpe01g00383 | 219 | CDD | MADS_MEF2_like | 6 | 73 | IPR033896 | GO:0000977|GO:0045944 | |
Cpe01g00383 | 219 | SUPERFAMILY | SRF-like | 6 | 78 | IPR036879 | GO:0003677|GO:0046983 | |
Cpe01g00383 | 219 | Gene3D | - | 83 | 175 | - | - | |
Cpe01g00383 | 219 | SMART | madsneu2 | 5 | 64 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe01g00383 | 219 | PRINTS | MADS domain signature | 7 | 27 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe01g00383 | 219 | PRINTS | MADS domain signature | 27 | 42 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe01g00383 | 219 | PRINTS | MADS domain signature | 42 | 63 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe01g00383 | 219 | Coils | Coil | 138 | 165 | - | - | |
Cpe01g00383 | 219 | ProSiteProfiles | MADS-box domain profile. | 5 | 65 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe01g00383 | 219 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 16 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe01g00383 | 219 | Coils | Coil | 93 | 120 | - | - | |
Cpe01g00383 | 219 | PANTHER | AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 | 5 | 177 | - | - | |
Cpe01g00383 | 219 | Gene3D | - | 17 | 81 | IPR036879 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g00383 | Cpe-Chr1:2209097 | Cpe16g00158 | Cpe-Chr16:3613107 | 1.59E-35 | dispersed | |
Cpe01g00383 | Cpe-Chr1:2209097 | Cpe19g01128 | Cpe-Chr19:7589881 | 5.21E-54 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48744 | PF00319 | SRF-TF | 3.50E-24 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe01g00383 | - | - | csv:101221957 | 380.948 |