Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00383 ATGAGGAAGAGTAGAGGCAGGCAAAAGGTTGAGATGGTCAAGATGCCTAATGAGAGCAACCTCCAAGTCACCTTCTCCAAGCGTCGCTCCGGCCTCTTCAAGAAAGCTAGCGAGCTCTGCACCCTTTGCGGTGCCGAGATTGCCATCATCGTCTTCTCCCCCGGGAAGAAAGTCTTCTCCTTTGGTCACCCTTGTGTCGAGGCTCTTATTGAACGCTTCGTCACTCGAAACCCTCCACCGAGCTCTGGTACACTTCAATTGATCGAAGCTCATCGGAATGCTAATGTTCGTGAACTAAATGCACAATTGACTCAAGTGTTGAACCATTTGGAGATGGAGCGGAAACGGGGCGAGGAGTTGAATAAATTACGAAAGGCTAATCAGCCGCAATGTTGGTGGGAGCTTCCTATCGAAGAAATGGAATTGCATCAACTCGAACAACTTAAATTGTCGTTGGACGAGCTAAAAAAGAATGTTACGCAACAAGCTGATCGGATTTTGATTCAAACCTCCAATGGCAACCCGCCCCCGCAATTCTTCCCGACTCCGACGCCTGCAAACCCAAACCAACAAGGCGGTGTCTATGTCGTCGATCAGAAGAACATGATCTCTCATCTTCCCTACAACTATGGCTCCTATGGATCAAGAGGTTTCTTTTGA 660 48.33 MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSFGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNHLEMERKRGEELNKLRKANQPQCWWELPIEEMELHQLEQLKLSLDELKKNVTQQADRILIQTSNGNPPPQFFPTPTPANPNQQGGVYVVDQKNMISHLPYNYGSYGSRGFF 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2209097 2209833 - Cp4.1LG01g02710.1 Cpe01g00383 461696

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00383 219 PANTHER MADS BOX PROTEIN 5 177 - -
Cpe01g00383 219 CDD MADS_MEF2_like 6 73 IPR033896 GO:0000977|GO:0045944
Cpe01g00383 219 SUPERFAMILY SRF-like 6 78 IPR036879 GO:0003677|GO:0046983
Cpe01g00383 219 Gene3D - 83 175 - -
Cpe01g00383 219 SMART madsneu2 5 64 IPR002100 GO:0003677|GO:0046983
Cpe01g00383 219 PRINTS MADS domain signature 7 27 IPR002100 GO:0003677|GO:0046983
Cpe01g00383 219 PRINTS MADS domain signature 27 42 IPR002100 GO:0003677|GO:0046983
Cpe01g00383 219 PRINTS MADS domain signature 42 63 IPR002100 GO:0003677|GO:0046983
Cpe01g00383 219 Coils Coil 138 165 - -
Cpe01g00383 219 ProSiteProfiles MADS-box domain profile. 5 65 IPR002100 GO:0003677|GO:0046983
Cpe01g00383 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 61 IPR002100 GO:0003677|GO:0046983
Cpe01g00383 219 Coils Coil 93 120 - -
Cpe01g00383 219 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 5 177 - -
Cpe01g00383 219 Gene3D - 17 81 IPR036879 GO:0003677|GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00383 - - - csv:101221957 380.948
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00383 Cpe-Chr1:2209097 Cpe16g00158 Cpe-Chr16:3613107 1.59E-35 dispersed
Cpe01g00383 Cpe-Chr1:2209097 Cpe19g01128 Cpe-Chr19:7589881 5.21E-54 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g784 . . . . . Bpe12g00730 . . . . . . . . . . . . . . . . . . Cla10g00956 Cam10g0979 Cec10g1010 Cco10g0973 Clacu10g1001 Cmu10g1783 Cre10g1157 . . . . . . . . . . . . . . . . Sed14g1573 Cmo04g00457 . . . . . . Cpe01g00383 Bhi11g01095 Tan01g0599 Cmetu07g0995 . Hepe07g0389 Mch10g0403 . . . . . . . . Lsi03g01001 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe01g00383 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 1.3e-37 154.1
Cpe01g00383 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 4.7e-49 192.2
Cpe14g00580 . 1 224 Type I MADS-box Gene Family AT1G77980 54.4 1.6e-58 223.8
Cpe14g00580 . 1 207 Type I MADS-box Gene Family AT1G77950 52.7 7.3e-51 198.0
Cpe01g01774 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 7.5e-53 204.9
Cpe04g00209 . 1 154 Type I MADS-box Gene Family AT5G48670 60.4 3.6e-47 186.0
Cpe09g00664 . 1 176 Type I MADS-box Gene Family AT5G48670 52.1 3.1e-46 183.0
Cpe20g00649 . 1 163 Type I MADS-box Gene Family AT5G48670 55.2 1.7e-44 177.2
Cpe01g00383 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 1.3e-37 154.1
Cpe01g00383 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 4.7e-49 192.2
Cpe14g00580 . 1 224 Type I MADS-box Gene Family AT1G77980 54.4 1.6e-58 223.8
Cpe14g00580 . 1 207 Type I MADS-box Gene Family AT1G77950 52.7 7.3e-51 198.0
Cpe01g01774 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 7.5e-53 204.9
Cpe04g00209 . 1 154 Type I MADS-box Gene Family AT5G48670 60.4 3.6e-47 186.0
Cpe09g00664 . 1 176 Type I MADS-box Gene Family AT5G48670 52.1 3.1e-46 183.0
Cpe20g00649 . 1 163 Type I MADS-box Gene Family AT5G48670 55.2 1.7e-44 177.2
Cpe01g00383 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 4.7e-49 192.2
Cpe01g01774 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 7.5e-53 204.9
Cpe04g00209 . 1 154 Type I MADS-box Gene Family AT5G48670 60.4 3.6e-47 186.0
Cpe09g00664 . 1 176 Type I MADS-box Gene Family AT5G48670 52.1 3.1e-46 183.0
Cpe20g00649 . 1 163 Type I MADS-box Gene Family AT5G48670 55.2 1.7e-44 177.2
Cpe01g00383 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 1.3e-37 154.1
Cpe14g00580 . 1 207 Type I MADS-box Gene Family AT1G77950 52.7 7.3e-51 198.0
Cpe14g00580 . 1 224 Type I MADS-box Gene Family AT1G77980 54.4 1.6e-58 223.8
Cpe01g00383 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 4.7e-49 192.2
Cpe01g01774 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 7.5e-53 204.9
Cpe04g00209 . 1 154 Type I MADS-box Gene Family AT5G48670 60.4 3.6e-47 186.0
Cpe09g00664 . 1 176 Type I MADS-box Gene Family AT5G48670 52.1 3.1e-46 183.0
Cpe20g00649 . 1 163 Type I MADS-box Gene Family AT5G48670 55.2 1.7e-44 177.2
Cpe01g00383 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 1.3e-37 154.1
Cpe14g00580 . 1 207 Type I MADS-box Gene Family AT1G77950 52.7 7.3e-51 198.0
Cpe14g00580 . 1 224 Type I MADS-box Gene Family AT1G77980 54.4 1.6e-58 223.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003994 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 2 2 1 7 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48744 PF00319 SRF-TF 3.50E-24 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00383 Cpe_Chr01 FPKM 22.231491 22.421389 15.204486 16.425375 11.786616 15.025238 15.236313 27.92119 27.620354 28.187252