Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00386 ACGGCGGCAGAGGACACTGCAGGAAACAGTGGCCAGCGGTCACGTGACAGTTGCAGGTTGAACCTGAACCACGATCAAGCGCCGGGAAAGTTAGTGAGTGCTATGATGATTCGTGCTCGTTGCAATTTCGTTGCTATAAACCCTGTGTTAGATGTGAAACGTTCAGATTCTCGTTTGTCGGTTATCGGTCGAACAGTTTGGTGCGATCGGGGTAGGATGAAGGGGAGAGTTGTAACTGGAGTTAAGGCGGCAATGCAGATGGATTTGGAGGATGATGAGAGGTTGAAACGATTGGACGGTTTAGAGGCGACATTAGGGCTTGATGTTGTGGCGGAGAGGGAATTGAAGGAGAAAGGGTTTTTGGGGATGAGGAAGACGAAGTTTGTTTGTACGATCGGGCCTGCGTGTTGTGCGATTGATGATTTGGAGAAGTTGGCTTTGGAAGGTATGAACATTGCGAGATTGAATATGTGTCACAACACGAAGGAGTGGCACTATGACGTGATTAGGAAGATCAAGAAGTTGAATGAAAAAGGATTTTGTATTTCGGTGATGATTGATACTGAAGGAAGTCAGATTCATGTTGTTGATCATGGAGCTCCTTCCTCCGTCAAAGTAGAGGATGGTTCAAATTGGTTGTTTACTGCTGAGAAATTCGAGGGCTCTCGTCCATTTACTGTTCAAGCGAGCTATGAAGGTATCCAAGTGGGTGATTCAATTGTGATTGATGGGGGAATGGCATCCTTTGAAGTTATGGAAAAGATTGGGAATGATTTAAGCTGCAAGTGCACAGACCCTGGTTTATTTCTTCCTCGAGCAAAATGCAGCTTTTGGAGGAATGGGAGGCTTGTTGTGAGAAAACATGAGTCTCCCACGCTGTCAAGTAAGGATTGGTCCGACATTGAATTTGGAATCTCGGAAGGCGTCGACTTCATTGCCCTTTCCTTTGTGAGCAGTGCAGAATCTGTCAAGCATCTAAAGAGCTACCTATCAGCAAAATCAGCAAAATCTGTGAGAGTATTGGCCAAGATTGAAAGCTTGGAGTCCCTTCAAAATCTAGAAGAAATCATAAAGGCTTCTGATGGAATCATGGTGGCTCGAGGGGATCTTGGGGTTGAAATTCCTCTCGAGCAGATACCGGCAGTCCAAGAAGAGATAACTAGTGTCTGTAGGGAGCTGAACAAACCAGTGATCGTAGCTTCTCAACTTCTAGAGTCGATGGTTGAATATCCTACTCCAACACGTGCTGAGGTTGCAGATGTTTCTGAAGCTGTCCGACAGTATGCCGATGCATTGATGCTGTGTGGAGAGTCTGCCATAGGATCATATGGACAGAAAGCGCTTTCGGTTCTGCAGATAGCCAGCAGCCGAATGGAGTTATGGAGTCGTGAAGAAAATAGGAAACATTTCCTTCCCCAACATCAACTTGGGGTGTCATTGCACGATCGCATTGCCGAAGAAATTTGCAATTCTGCAGCGGAATTGGCCAACAAACTTTCAGTAGACGCTATATTCGTGCTCACAAAGCAAGGTCACATGGCTTCTCTTCTATCCCGAAACCGCCCCAGCCCGCCTATATTCGCATTAACCGACGACGACAGCACGAGAATGGGTTTGAATCTTCAATGGGGAGTGTTTCCTCTGCGCATTGACCTCTCAGACGACATAGAAGCCAACATCTCAAGAGGAATCGAGCTTGTGAAGTCAAAGGGACTGGTCAAACAAGGGGACTTCGTGTTGATGGTCTCAGAGATCTCTCCAGCTCGAGCTGCATCTATGGCGTCCCAATCAATCCAGCTGAAATCCATCGTGTAG 1815 46.67 TAAEDTAGNSGQRSRDSCRLNLNHDQAPGKLVSAMMIRARCNFVAINPVLDVKRSDSRLSVIGRTVWCDRGRMKGRVVTGVKAAMQMDLEDDERLKRLDGLEATLGLDVVAERELKEKGFLGMRKTKFVCTIGPACCAIDDLEKLALEGMNIARLNMCHNTKEWHYDVIRKIKKLNEKGFCISVMIDTEGSQIHVVDHGAPSSVKVEDGSNWLFTAEKFEGSRPFTVQASYEGIQVGDSIVIDGGMASFEVMEKIGNDLSCKCTDPGLFLPRAKCSFWRNGRLVVRKHESPTLSSKDWSDIEFGISEGVDFIALSFVSSAESVKHLKSYLSAKSAKSVRVLAKIESLESLQNLEEIIKASDGIMVARGDLGVEIPLEQIPAVQEEITSVCRELNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLCGESAIGSYGQKALSVLQIASSRMELWSREENRKHFLPQHQLGVSLHDRIAEEICNSAAELANKLSVDAIFVLTKQGHMASLLSRNRPSPPIFALTDDDSTRMGLNLQWGVFPLRIDLSDDIEANISRGIELVKSKGLVKQGDFVLMVSEISPARAASMASQSIQLKSIV 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2225815 2231107 + Cp4.1LG01g02840.1 Cpe01g00386 461699

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00386 604 Gene3D - 126 452 IPR040442 -
Cpe01g00386 604 PANTHER PYRUVATE KINASE 66 603 - -
Cpe01g00386 604 SUPERFAMILY PK C-terminal domain-like 482 585 IPR036918 -
Cpe01g00386 604 ProSitePatterns Pyruvate kinase active site signature. 338 350 IPR018209 GO:0004743|GO:0006096
Cpe01g00386 604 Pfam Pyruvate kinase, alpha/beta domain 486 586 IPR015795 -
Cpe01g00386 604 Pfam Pyruvate kinase, barrel domain 123 454 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe01g00386 604 SUPERFAMILY PK beta-barrel domain-like 193 276 IPR011037 -
Cpe01g00386 604 Gene3D - 192 290 IPR015806 GO:0004743|GO:0006096
Cpe01g00386 604 Gene3D - 458 599 IPR036918 -
Cpe01g00386 604 PRINTS Pyruvate kinase family signature 309 323 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe01g00386 604 PRINTS Pyruvate kinase family signature 436 452 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe01g00386 604 PRINTS Pyruvate kinase family signature 417 435 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe01g00386 604 PRINTS Pyruvate kinase family signature 180 196 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe01g00386 604 PRINTS Pyruvate kinase family signature 392 416 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe01g00386 604 PRINTS Pyruvate kinase family signature 367 391 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe01g00386 604 PRINTS Pyruvate kinase family signature 340 366 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe01g00386 604 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 118 459 IPR015813 GO:0003824
Cpe01g00386 604 PANTHER PYRUVATE KINASE 66 603 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe01g00386 604 TIGRFAM pyruv_kin: pyruvate kinase 124 589 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00386 K00873 PK, pyk; pyruvate kinase [EC:2.7.1.40] - csv:101220786 978.393
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g00386 Cpe14g00251 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00386 Cpe-Chr1:2225815 Cpe12g00169 Cpe-Chr12:1105162 0 dispersed
Cpe01g00386 Cpe-Chr1:2225815 Cpe14g00251 Cpe-Chr14:1454729 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g773 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00959 Cam10g0982 Cec10g1013 . Clacu10g1004 Cmu10g1787 Cre10g1160 . . . . . . . . . . . . . . . . Sed13g0418 Cmo04g00460 Cmo16g00321 . . . . Cpe14g00251 Cpe01g00386 Bhi11g01099 Tan01g0602 Cmetu07g0067 . . Mch10g0406 . . . . . . . . Lsi03g01004 . . Cme07g02213
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012138 0 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00386 Cpe_Chr01 FPKM 12.514209 14.958985 50.479713 52.145927 377.744141 353.528076 376.813293 32.045723 33.007252 30.863213