Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00388 ATGAGAGAGTGCATTTCAATCCACATTGGTCAGGCCGGTATCCAGGTCGGAAATGCCTGCTGGGAGCTTTACTGCCTCGAACACGGTATTCAGCCCGATGGCCAAATGCCAGGCGACACCACTACTGGTGGAGGCGATGATGCTTTCAACACCTTTTTCAGTGAAACTGGTGCGGGAAAGCATGTTCCTCGTGCGGTTTTTGTCGATCTTGAACCTACAGTTATTGATGAGGAAATTGTTGATCTCTGCTTGGACCGAATCCGCAAGCTAGCTGATAACTGCACTGGTCTTCAAGGATTCCTTGTGTTCAACGCCGTTGGTGGTGGTACTGGATCTGGTCTTGGCTCCCTCCTTTTGGAGCGTTTGTCGGTTGACTATGGAAAGAAATCGAAGCTTGGGTTCACTGTTTACCCCTCCCCACAAGTCTCAACCTCTGTTGTTGAGCCATACAACAGTGTCCTCTCAACCCATTCCCTCTTGGAACACACCGATGTCGCTGTGCTCCTTGACAATGAAGCCATTTACGATATCTGCAGGCGCTCCCTTGACATTGAGCGACCCAACTACTCCAACCTCAACCGCCTGGTGTCTCAGGTTATTTCATCTTTAACTGCCAGTTTGAGGTTCGATGGTGCCCTGAATGTGGATGTGAACGAATTCCAGACCAACTTGGTCCCATACCCCAGAATCCACTTCATGCTTTCCTCATATGCACCAGTGATCTCAGCCGAGAAGGCTTACCATGAGCAGCTCTCAGTGGCTGAGATCACCAACAGTGCCTTCGAGCCATCGTCTATGATGGTTAAGTGTGACCCCCGACATGGAAAGTACATGGCTTGCTGTCTGATGTACCGTGGTGATGTTGTGCCAAAGGACGTGAATGCTGCTGTTGCTACCATCAAGACCAAGCGTACCATCCAGTTTGTTGACTGGTGCCCCACTGGGTTCAAGTGTGGTATCAACTACCAGCCACCAACTGTTGTCCCTGGAGGCGATCTTGCCCGGGTGCAGAGGGCTGTCTGCAAGATCTCGAACTCAACCAGTGTTGCTGAGGTCTTCTCCCGAATTGACCACAAGTTTGATCTCATGTATGCCAAGCGTGCCTTCGTGCACTGGTATGTCGGTGAGGGTATGGAGGAAGGAGAGTTCTCTGAAGCCCGAGAGGATCTTGCTGCCCTCGAGAAGGATTATGAAGAAGTCGGTGCTGAGTCGGCTGAGGGTGAGGACGATGAAGGAGAAGACTATTGA 1248 51.04 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDTTTGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPNYSNLNRLVSQVISSLTASLRFDGALNVDVNEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMVKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCKISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEGEDDEGEDY 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2236951 2240695 - Cp4.1LG01g02730.1 Cpe01g00388 461701

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00388 415 PANTHER TUBULIN 78 409 IPR000217 GO:0005874|GO:0007017
Cpe01g00388 415 Coils Coil 383 403 - -
Cpe01g00388 415 CDD alpha_tubulin 2 400 - -
Cpe01g00388 415 SMART Tubulin_4 49 211 IPR003008 GO:0005525
Cpe01g00388 415 PANTHER TUBULIN 1 77 IPR000217 GO:0005874|GO:0007017
Cpe01g00388 415 SUPERFAMILY Tubulin C-terminal domain-like 211 401 IPR008280 -
Cpe01g00388 415 PANTHER TUBULIN ALPHA CHAIN 1 77 - -
Cpe01g00388 415 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874|GO:0007017
Cpe01g00388 415 PRINTS Tubulin signature 345 373 IPR000217 GO:0005874|GO:0007017
Cpe01g00388 415 PRINTS Tubulin signature 53 72 IPR000217 GO:0005874|GO:0007017
Cpe01g00388 415 PRINTS Alpha-tubulin signature 18 33 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cpe01g00388 415 PRINTS Alpha-tubulin signature 350 366 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cpe01g00388 415 PRINTS Alpha-tubulin signature 286 307 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cpe01g00388 415 PRINTS Alpha-tubulin signature 325 344 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cpe01g00388 415 PRINTS Alpha-tubulin signature 387 403 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cpe01g00388 415 PRINTS Alpha-tubulin signature 45 58 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cpe01g00388 415 PRINTS Alpha-tubulin signature 312 325 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cpe01g00388 415 PANTHER TUBULIN ALPHA CHAIN 78 409 - -
Cpe01g00388 415 Gene3D Helix hairpin bin 349 401 IPR023123 -
Cpe01g00388 415 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 107 113 IPR017975 GO:0005525|GO:0005874|GO:0007017
Cpe01g00388 415 Pfam Tubulin/FtsZ family, GTPase domain 76 178 IPR003008 GO:0005525
Cpe01g00388 415 Pfam Tubulin C-terminal domain 228 357 IPR018316 -
Cpe01g00388 415 Gene3D Tubulin/FtsZ, GTPase domain 77 233 IPR036525 -
Cpe01g00388 415 Gene3D Tubulin/FtsZ, GTPase domain 1 76 IPR036525 -
Cpe01g00388 415 Gene3D - 234 348 IPR037103 -
Cpe01g00388 415 SMART Tubulin_C_4 213 358 IPR018316 -
Cpe01g00388 415 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 209 IPR036525 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00388 K07374 TUBA; tubulin alpha - csv:101221020 768.074
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g00388 Cpe15g00428 CCT
Cpe01g00388 Cpe04g00335 CCT
Cpe01g00388 Cpe14g00253 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00388 Cpe-Chr1:2236951 Cpe19g00707 Cpe-Chr19:5536410 0 dispersed
Cpe01g00388 Cpe-Chr1:2236951 Cpe10g00513 Cpe-Chr10:3014740 0 wgd
Cpe01g00388 Cpe-Chr1:2236951 Cpe14g00253 Cpe-Chr14:1466626 0 wgd
Cpe01g00388 Cpe-Chr1:2236951 Cpe15g00428 Cpe-Chr15:5435065 0 wgd
Cpe01g00388 Cpe-Chr1:2236951 Cpe04g00335 Cpe-Chr4:4088544 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g770 Blo02g00917 Blo03g00060 Bda06g01159 . Bpe07g00293 . . Bma12g00302 Cmo19g00553 Cmo11g01429 . . . . . Cpe04g00335 Cpe15g00428 . . . . . . . Cla02g00698 Cam02g0731 Cec02g0746 Cco02g0770 Clacu02g0742 Cmu02g0737 Cre02g1050 . . . . Lsi03g00600 Csa07g00669 . Cme01g00135 . . . . . . . . Sed07g1149 Cmo04g00462 Cmo16g00324 Cma11g01691 Cma19g00539 Car11g01152 Car19g00396 Cpe14g00253 Cpe01g00388 Bhi11g01102 Tan01g0605 Cmetu08g1396 . Hepe07g0394 Mch10g0408 . . . . . . . . Lsi03g01006 . Chy01g00146 Cme07g02211
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000221 6 4 6 6 4 5 8 5 5 5 5 5 8 5 5 9 5 12 9 5 5 4 4 5 5 4 5 6 3 5 168
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00388 Cpe_Chr01 FPKM 5.875445 6.230433 5.746726 5.648166 2.008298 3.172544 2.790607 3.958306 3.429322 4.200293