Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00389 ATGGCCGCTCTCTCAATCGCTTCAAATTCATGGCTCATTAGTTACAAGGAAAGGCCCTATCGAAGCCGCTCAATCGCCAAGCCTTATAGTAAGAGTCCACTAGGGCGTAAAACTGAGGGATGCTTCCTCACAGTTTCCAGACCGATTGCAAGAAATCGGTTAAGATTCTCCGCCAGAGATGATTTGGAAAGTGAGCCGTCGTCGTCGTCGTCTTCGGTCGCGGTGGTTTCCGATGAGCGGGAGGGCGGAAACGACAGCGAGAAGGCGGAAGTGTCTGCCGGAGGAGATGAGATTGAAGAGAAGGAGAAACAGCAGGAAATGGATTGGAAGACGGACGAGGAATTCAAGAAATTCATGGGAAATCCTTCGATCGAAGCTGCTATAAAGTTGGAGAAGAAGAGGGCGGATCGGAAGCTGAAGGAGCTTGATCGTGAAGGCGCTGATAATCCGATTGTAGGATTGTTCGCTAGAATTGCACGCGAAAATTTGGCAAAAGAGAAAGAGAGATTAGAGAAGGCCGAAGAGACATTCAAGGCTCTTGATCTTAACAAGTTAAAGGGTTGCTTTGGATTCAACACATTTTTTGCAACGGATGTTCGTAGATTTGGAGATGGAGGTATTTTCATAGGGAACTTGAGGAGACCCATTGAAGAGGTGATTCCCCAGTTGGAGAAGAAGCTGTCCGAGGCAGCAGGGAGGGAGGTAGTCCTGTGGTTCATGGAAGAAAAAACTGATGACATTACAAAACAGGTCTGCATGGTGCAACCCAAGGCAGAAATAGACCTTCAATTTGAGTCTACAACGCTGAGTACTCCATTGGGGTATTTTAGTGCAATAGCTTTGTGCGTTGCAACCTTTGGGACTATTGCGTTGATGAGTGGCTTCTTCCTAAAACCTGGTGCTACCTTTGATGACTATATAGCTAATGTTGTTCCCCTTTTTGGTGGCTTCATCTCCATCTTGGGAGTTTCAGAGCTAAGCCCTTCTTTTCTTGTGCCTTCCAATTGGACGGGATGCTTAGGAGTGATGAATAACTATGAATCACTACTTCCAAACAAGAAAGCACTTTTCGATATTCCAGTAGCACGAACTGCCGCTGCATACTTAACGTCATTGGCGCTTGCAATCTCTGCTTTTGTGATTGATGGTGGCTTTAATGGCGGTGACAATGCATTGTATATCAGACCCCAATTCTTCTTCAACAACCCTTTGCTTTCTTTTATCCAGTTTGTTATAGGACCTTACACAGATGACCTTGGCAATGTCCTGCCCTACGCAGTGGAAGGTGTAGGGGTCCCTGTGGATCCCCTTGCTTTTGCTGGCCTTTTAGGGATGGTAGTCACATCTTTGAACTTGTTACCATGTGGGAGGCTCGAAGGAGGCCGCATTGCGCAAGCCATGTTCGGGAGAAGCACCGCAGCCCTACTGTCGTTTGCTACATCGCTCATACTCGGTATTGGTGGATTGAGCGGAAGCGTCCTATGTTTGGCATGGGGTTTGTTTGCAACGTTCTTTCGAGGTGGTGAAGAGATCCCTGCAACCGATGAGATCACACCGCTAGGAGATGATCGAAATCCTGTCAAGAAAGGGCCAGATTCAGCCATGAAATTGCGGCTGAGATCCCTAGATTTCCAAGAGACCGTCGGAATTGAAGTCCCCGATCAATGCTCATTCGAGCACCTGAAACATACGCTCCTCCAAACACTCTCGCCTTCCGTTTCGGCCGATCCTCTTCATCTCTCTCTCAATCAAAAAGACGAGCTCCAAGTATCATCGGAGGAGGATTCGCTCTGCTCCATTGGTATTACTTCCGGTGATCTTGTTTTCTTCACTTTTAATTCTTCTCAATTTCCCCCTCGGGGAGCGAGATCGATTCAATCTTCTCCAGGACTTCTTCCTGATGTTTATCCACAAGATTCGTCTTCGTCGCGACCGCAGGTTGAAGGAGAGCAAATTCAGGGTAGCGATTTTGACCTTAAAGAACCTAGGTTGGAGAAATTTGAACCTGTATTCATCGGACCCGAGTCCTTGGATGCGGAAGCAACTACCGGTGGCATGATCGAGGAAGAGGAGAAACTCTTGGAGTCAGATTCCGAAGAAATGAACGCCGAGGATGAACCGATCGGAGATGTGGAAAAGAAATGTTCAAAGCCGATTTTCTTGAGGAGAGTGATGGAGGAGGAGTTAGGCTATGGTGATTGTAATGCTCACAAGCTTTTATTAACTGCCGTTCACGCTGTACTCTTGGAATCTGGATTCGTTCTGGTTGATCCTATTTTAGGTTCTGAGATTAGCCGTATCCACATGCCGGAAGACTGGCCTTCGCGATCATTTTCGATCTCACTCCGGTACACTTTACCTCAACTTTTGGCCGAAGGAGGCAAAAACTCCATTAAAACCGAGGTAGTTTTATTGAAGTTTCAGAGTTTGGGGAACTTTCTTAATGTTTATGGATCTCTTAGCTGCAGTAAAGGATCAGATGTTTATAGTGTGTCTTTGGATGAAAGAAAATTTACACCCAATCTTCTTTCGATTTGGATGGATCCAGTGTCCAGCCACATAATAGATGAACACGAAGAGAATCCAGAGAGGCAAGTTCTTGAATTCTGGAAGATAGTGAAGGATGCTATTTCATTCCCACTCTTGATTGATCTCTGTGAAAAAACTGGCCTATGTCCTCCTTCAAGCTTCATGCAACTTCCAGAGGATTTGAAGCTGAAGATCTTGGAGTCTCTTCCTATTGAGGACATTGTAAGTGTTCAATATGTGTGTACTGAATTGCGTCAATTGGTATCCAGTAATGAGGTATGGAAGGTGAAGTTCAATCAAAAGCTTGCTTTAGGGGAGGGTGCTGTTCTTCCAGGAAAGAAAACACCGGCATCGCGCAAACCCGAACATAGACTTCCACGACGAGTTGCTCGGATTCCGAGGCGAAACGCTTTCATGTCGCATTCTCGTTTGAGAGGACGATGA 2973 46.22 MAALSIASNSWLISYKERPYRSRSIAKPYSKSPLGRKTEGCFLTVSRPIARNRLRFSARDDLESEPSSSSSSVAVVSDEREGGNDSEKAEVSAGGDEIEEKEKQQEMDWKTDEEFKKFMGNPSIEAAIKLEKKRADRKLKELDREGADNPIVGLFARIARENLAKEKERLEKAEETFKALDLNKLKGCFGFNTFFATDVRRFGDGGIFIGNLRRPIEEVIPQLEKKLSEAAGREVVLWFMEEKTDDITKQVCMVQPKAEIDLQFESTTLSTPLGYFSAIALCVATFGTIALMSGFFLKPGATFDDYIANVVPLFGGFISILGVSELSPSFLVPSNWTGCLGVMNNYESLLPNKKALFDIPVARTAAAYLTSLALAISAFVIDGGFNGGDNALYIRPQFFFNNPLLSFIQFVIGPYTDDLGNVLPYAVEGVGVPVDPLAFAGLLGMVVTSLNLLPCGRLEGGRIAQAMFGRSTAALLSFATSLILGIGGLSGSVLCLAWGLFATFFRGGEEIPATDEITPLGDDRNPVKKGPDSAMKLRLRSLDFQETVGIEVPDQCSFEHLKHTLLQTLSPSVSADPLHLSLNQKDELQVSSEEDSLCSIGITSGDLVFFTFNSSQFPPRGARSIQSSPGLLPDVYPQDSSSSRPQVEGEQIQGSDFDLKEPRLEKFEPVFIGPESLDAEATTGGMIEEEEKLLESDSEEMNAEDEPIGDVEKKCSKPIFLRRVMEEELGYGDCNAHKLLLTAVHAVLLESGFVLVDPILGSEISRIHMPEDWPSRSFSISLRYTLPQLLAEGGKNSIKTEVVLLKFQSLGNFLNVYGSLSCSKGSDVYSVSLDERKFTPNLLSIWMDPVSSHIIDEHEENPERQVLEFWKIVKDAISFPLLIDLCEKTGLCPPSSFMQLPEDLKLKILESLPIEDIVSVQYVCTELRQLVSSNEVWKVKFNQKLALGEGAVLPGKKTPASRKPEHRLPRRVARIPRRNAFMSHSRLRGR 990
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2242006 2247559 - Cp4.1LG01g02760.1 Cpe01g00389 461702

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00389 990 PANTHER ZINC METALLOPEPTIDASE EGY3, CHLOROPLASTIC-RELATED 45 525 - -
Cpe01g00389 990 PANTHER ZINC METALLOPROTEASE EGY1 45 525 IPR044838 -
Cpe01g00389 990 Gene3D - 897 988 - -
Cpe01g00389 990 ProSiteProfiles F-box domain profile. 894 940 IPR001810 GO:0005515
Cpe01g00389 990 MobiDBLite consensus disorder prediction 620 653 - -
Cpe01g00389 990 MobiDBLite consensus disorder prediction 57 107 - -
Cpe01g00389 990 SMART fbox_2 900 940 IPR001810 GO:0005515
Cpe01g00389 990 MobiDBLite consensus disorder prediction 80 107 - -
Cpe01g00389 990 MobiDBLite consensus disorder prediction 63 77 - -
Cpe01g00389 990 Coils Coil 156 183 - -
Cpe01g00389 990 SUPERFAMILY F-box domain 890 944 IPR036047 GO:0005515
Cpe01g00389 990 Pfam F-box domain 898 938 IPR001810 GO:0005515
Cpe01g00389 990 Coils Coil 125 145 - -
Cpe01g00389 990 MobiDBLite consensus disorder prediction 631 650 - -
Cpe01g00389 990 Gene3D - 716 896 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00389 K25380 EGY; zinc metalloprotease EGY, chloroplastic [EC:3.4.24.-] - csv:101220315 898.271
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00389 Cpe-Chr1:2242006 Cpe01g02519 Cpe-Chr1:20666138 4.14E-16 dispersed
Cpe10g01063 Cpe-Chr10:6362689 Cpe01g00389 Cpe-Chr1:2242006 3.99E-15 transposed
Cpe01g00389 Cpe-Chr1:2242006 Cpe14g00254 Cpe-Chr14:1471091 1.34E-162 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g766 Blo02g00919 . . . . . Bma05g00641 . . . . . . . . . . . . . . . . . Cla10g00963 Cam10g0986 Cec10g1017 . Clacu10g1008 Cmu10g1791 Cre10g1164 . . . Cone10ag1060 . . . . . . . . . Bpe05g00462 . . Sed07g1144 Cmo04g00464 . . . . . . Cpe01g00389 Bhi11g01104 Tan01g0607 Cmetu07g1105 . . Mch10g0410 . . . . . . . . Lsi03g01008 . . Cme07g02209
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009933 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00389 Cpe_Chr01 FPKM 0.939815 0.0 0.0 0.0 0.0 0.0 0.803246 0.0 0.0 1.081184