Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00392 ATGGACCAATCTTTTCTTTCTCATGGCGGCTCTGATCGCATTGTTGGCCGAGAAAGTGGTTTCTGTGATGGATATTGGAGAGCTGAAGCTACTGAAGAACATGAAGTTGAGGAGGATCTTTCTATGGTCTCTGATGCATCTTCTGGCCCTCCACATTTCTTTGAAGATGAGGCTTGCTCTCATGAAGACGATGGGCATTTCTCTCATGCTTCTAAGTCAGTAACACCGGAGAAGAACAAGGGAAAGAAGCAGAAAATTACAGAATATCAATGTCATGATCAGCCATCTTCCTTCCTAGATGACACTGCTAGCTCCCCTGCTCGCAACTTCACTGCTAATAACTTCACCAATCAAGGCTCAATGGAAAGCTTCTTGGGCTTGTCTCAAACCAGTCATTTTGAGGAAAGATCATCATTTACAGAGCATTTTGGGTTCCTTCAATCTTCTCTATCAGGAAATAGATTACAAAAGAACCAGTTG 480 42.92 MDQSFLSHGGSDRIVGRESGFCDGYWRAEATEEHEVEEDLSMVSDASSGPPHFFEDEACSHEDDGHFSHASKSVTPEKNKGKKQKITEYQCHDQPSSFLDDTASSPARNFTANNFTNQGSMESFLGLSQTSHFEERSSFTEHFGFLQSSLSGNRLQKNQL 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2271022 2272106 - Cp4.1LG01g02770.1 Cpe01g00392 461705

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00392 160 PANTHER OSJNBA0091C07.3 PROTEIN 26 153 - -
Cpe01g00392 160 PANTHER OSJNBA0091C07.3 PROTEIN 26 153 IPR044670 GO:0009690|GO:0009691
Cpe01g00392 160 MobiDBLite consensus disorder prediction 55 89 - -
Cpe01g00392 160 MobiDBLite consensus disorder prediction 90 105 - -
Cpe01g00392 160 MobiDBLite consensus disorder prediction 43 105 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00392 - - - csv:101222672 244.973
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g00392 Cpe14g00258 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00392 Cpe-Chr1:2271022 Cpe14g00258 Cpe-Chr14:1483296 1.65E-45 wgd
Cpe01g00392 Cpe-Chr1:2271022 Cpe15g00431 Cpe-Chr15:5459795 2.89E-09 wgd
Cpe01g00392 Cpe-Chr1:2271022 Cpe02g00227 Cpe-Chr2:1163449 2.32E-07 wgd
Cpe01g00392 Cpe-Chr1:2271022 Cpe04g00331 Cpe-Chr4:4067907 1.93E-06 wgd
Cpe01g00392 Cpe-Chr1:2271022 Cpe06g00207 Cpe-Chr6:1098590 1.91E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g726 . . Bda06g01178 Bda08g00682 Bpe07g00286 . . Bma12g00293 . . . . . . . . . . . . . . . . Cla10g00968 Cam10g0992 Cec10g1022 Cco10g0984 Clacu10g1012 Cmu10g1797 Cre10g1169 . . Cone3ag1038 Cone10ag1054 . . . . . . . . . . . . Sed07g1252 Cmo04g00469 Cmo16g00329 . . . . Cpe14g00258 Cpe01g00392 Bhi11g01120 Tan01g0616 Cmetu07g0418 . . Mch10g0415 . . . . . . . . Lsi03g01010 . . Cme07g02203
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004694 2 1 0 2 2 1 2 1 1 1 1 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 1 4 2 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00392 Cpe_Chr01 FPKM 7.225911 7.834634 6.876898 7.108271 8.727577 6.991567 9.069385 6.965048 6.436347 7.082336