Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00396 ATGGGTGCTCCGAAGCAGAAATGGACTAACCAAGAAGAAACAGCCCTGAAGGCTGGAGTTGTTAAACATGGAGCTGGAAAGTGGCGAACAATACTTAAGGATCCTGAATTCAGTGATGTACTGTATCTTCGTTCAAATGTTGATCTCAAGGATAAGTGGAGAAACATGAGCGTCATGGCTAATGGCTGGGGATCCCGAGATAAGGCGAGGTTGGCACTTAAGAGATTGCATGCTCCTAAAAAAGATGAGAGTATTGTGGCTCAAGGCATTGCTGTCCAAAGTGAGGATGAATTTCCGGAAGCTAAGACTGTTTCCCTTTCCTTGGACATCAAGCAGATAGCTGGTCCAAAGCAATCAAATGTAAGAAACGAAGAGGAAGATGAAGAAGAAGAAGAAAAAGAAGTAGAAAGAACAGAAAGAGATGCAATGTATGATTGTCATAGGTTAGACAATCTTATAATTGAGGCAATTTCTACCTTGAGAGAACGTAGTGGCTCTATTAAGAATAGCATTGCTTTATATATAGAGGATCAGTACTGGGCTCCTCCAGACTTCAAGCGGTTGTTATCATCGAAATTGAAGTTCTTAACAGCTAGTGGTAAACTGGTTAAGGTTAAACGGAGATACAGGCTCGCTCCAACGGTGTCTTCTTGCGAGAGAAGGGGCTCTATATGGTTGGAGTTTGATGGAAAGCAATACCTGATTTGGAAGTGTTATGGCGCTGTTCTTAAATTGATCGGACATGTTCTGCACTTACTATCGGTAGAGCATTGTAAGCAACCTCTCGCCCACCATTTTCAACCACTTTTTGGGCAACTCGAGCAACAGGGTCAGACTTGGATATCTAAACAAGGGAAGTTGCCATGGGGCTTAGTTAGTTGCAGGTAA 888 42.79 MGAPKQKWTNQEETALKAGVVKHGAGKWRTILKDPEFSDVLYLRSNVDLKDKWRNMSVMANGWGSRDKARLALKRLHAPKKDESIVAQGIAVQSEDEFPEAKTVSLSLDIKQIAGPKQSNVRNEEEDEEEEEKEVERTERDAMYDCHRLDNLIIEAISTLRERSGSIKNSIALYIEDQYWAPPDFKRLLSSKLKFLTASGKLVKVKRRYRLAPTVSSCERRGSIWLEFDGKQYLIWKCYGAVLKLIGHVLHLLSVEHCKQPLAHHFQPLFGQLEQQGQTWISKQGKLPWGLVSCR 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2296937 2302390 + Cp4.1LG01g02690.1 Cpe01g00396 461709

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00396 295 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 145 213 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cpe01g00396 295 PANTHER SINGLE MYB HISTONE 4 1 233 IPR044597 GO:0003691
Cpe01g00396 295 SMART sant 4 59 IPR001005 -
Cpe01g00396 295 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Cpe01g00396 295 MobiDBLite consensus disorder prediction 117 139 - -
Cpe01g00396 295 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
Cpe01g00396 295 Gene3D - 8 88 - -
Cpe01g00396 295 Gene3D - 145 220 IPR036388 -
Cpe01g00396 295 Pfam linker histone H1 and H5 family 150 206 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cpe01g00396 295 CDD H15 151 217 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cpe01g00396 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Cpe01g00396 295 SMART h15plus2 147 208 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cpe01g00396 295 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 1 233 - -
Cpe01g00396 295 SUPERFAMILY Homeodomain-like 2 65 IPR009057 -
Cpe01g00396 295 SUPERFAMILY Winged helix DNA-binding domain 146 215 IPR036390 -
Cpe01g00396 295 CDD SANT_TRF 6 56 - -
Cpe01g00396 295 Coils Coil 118 141 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00396 K09422 MYBP; transcription factor MYB, plant - csv:101218411 332.413
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g00396 Cpe14g00260 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00396 Cpe-Chr1:2296937 Cpe02g01732 Cpe-Chr2:14178581 1.76E-32 dispersed
Cpe01g00396 Cpe-Chr1:2296937 Cpe10g00484 Cpe-Chr10:2853798 2.15E-57 wgd
Cpe01g00396 Cpe-Chr1:2296937 Cpe14g00260 Cpe-Chr14:1500414 1.21E-121 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g722 . Blo03g00069 Bda06g01187 . Bpe07g00280 . . Bma12g00288 . . . . . . . . . . . . . . . . Cla10g00975 Cam10g0998 Cec10g1028 Cco10g0991 Clacu10g1019 Cmu10g1802 Cre10g1176 . . Cone8ag0167 Cone12ag0173 . . . . . . . . . . . . . Cmo04g00473 Cmo16g00332 . . . . Cpe14g00260 Cpe01g00396 Bhi11g01125 . . . . . . . . . . . . . Lsi03g01014 . . Cme07g02198
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe14g00260 CST 1 248 Single Myb Histone (SMH) Gene Family AT1G49950 57.6 8.6e-67 251.1
Cpe10g00484 . 20 266 Single Myb Histone (SMH) Gene Family AT1G49950 53.5 4.4e-63 238.8
Cpe01g00396 CST 1 232 Single Myb Histone (SMH) Gene Family AT1G49950 55.6 1.3e-59 227.3
Cpe10g00484 . 20 266 Single Myb Histone (SMH) Gene Family AT5G67580 54.0 2.5e-66 249.6
Cpe10g00484 . 20 266 Single Myb Histone (SMH) Gene Family AT3G49850 50.2 6.1e-57 218.4
Cpe03g01057 . 1 269 Single Myb Histone (SMH) Gene Family AT1G17520 51.7 1.7e-67 253.4
Cpe02g01732 . 1 272 Single Myb Histone (SMH) Gene Family AT1G17520 51.4 2.2e-67 253.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005794 2 4 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48745 PF00538 Linker_histone 2.20E-08 CL0123 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00396 Cpe_Chr01 FPKM 0.0 0.0 1.626355 1.498302 16.281366 17.320183 15.904733 0.704435 0.82116 0.434474