Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00396 ATGGGTGCTCCGAAGCAGAAATGGACTAACCAAGAAGAAACAGCCCTGAAGGCTGGAGTTGTTAAACATGGAGCTGGAAAGTGGCGAACAATACTTAAGGATCCTGAATTCAGTGATGTACTGTATCTTCGTTCAAATGTTGATCTCAAGGATAAGTGGAGAAACATGAGCGTCATGGCTAATGGCTGGGGATCCCGAGATAAGGCGAGGTTGGCACTTAAGAGATTGCATGCTCCTAAAAAAGATGAGAGTATTGTGGCTCAAGGCATTGCTGTCCAAAGTGAGGATGAATTTCCGGAAGCTAAGACTGTTTCCCTTTCCTTGGACATCAAGCAGATAGCTGGTCCAAAGCAATCAAATGTAAGAAACGAAGAGGAAGATGAAGAAGAAGAAGAAAAAGAAGTAGAAAGAACAGAAAGAGATGCAATGTATGATTGTCATAGGTTAGACAATCTTATAATTGAGGCAATTTCTACCTTGAGAGAACGTAGTGGCTCTATTAAGAATAGCATTGCTTTATATATAGAGGATCAGTACTGGGCTCCTCCAGACTTCAAGCGGTTGTTATCATCGAAATTGAAGTTCTTAACAGCTAGTGGTAAACTGGTTAAGGTTAAACGGAGATACAGGCTCGCTCCAACGGTGTCTTCTTGCGAGAGAAGGGGCTCTATATGGTTGGAGTTTGATGGAAAGCAATACCTGATTTGGAAGTGTTATGGCGCTGTTCTTAAATTGATCGGACATGTTCTGCACTTACTATCGGTAGAGCATTGTAAGCAACCTCTCGCCCACCATTTTCAACCACTTTTTGGGCAACTCGAGCAACAGGGTCAGACTTGGATATCTAAACAAGGGAAGTTGCCATGGGGCTTAGTTAGTTGCAGGTAA 888 42.79 MGAPKQKWTNQEETALKAGVVKHGAGKWRTILKDPEFSDVLYLRSNVDLKDKWRNMSVMANGWGSRDKARLALKRLHAPKKDESIVAQGIAVQSEDEFPEAKTVSLSLDIKQIAGPKQSNVRNEEEDEEEEEKEVERTERDAMYDCHRLDNLIIEAISTLRERSGSIKNSIALYIEDQYWAPPDFKRLLSSKLKFLTASGKLVKVKRRYRLAPTVSSCERRGSIWLEFDGKQYLIWKCYGAVLKLIGHVLHLLSVEHCKQPLAHHFQPLFGQLEQQGQTWISKQGKLPWGLVSCR 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2296937 2302390 + Cp4.1LG01g02690.1 Cpe01g00396 461709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00396 295 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 145 213 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cpe01g00396 295 PANTHER SINGLE MYB HISTONE 4 1 233 IPR044597 GO:0003691
Cpe01g00396 295 SMART sant 4 59 IPR001005 -
Cpe01g00396 295 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Cpe01g00396 295 MobiDBLite consensus disorder prediction 117 139 - -
Cpe01g00396 295 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
Cpe01g00396 295 Gene3D - 8 88 - -
Cpe01g00396 295 Gene3D - 145 220 IPR036388 -
Cpe01g00396 295 Pfam linker histone H1 and H5 family 150 206 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cpe01g00396 295 CDD H15 151 217 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cpe01g00396 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Cpe01g00396 295 SMART h15plus2 147 208 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cpe01g00396 295 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 1 233 - -
Cpe01g00396 295 SUPERFAMILY Homeodomain-like 2 65 IPR009057 -
Cpe01g00396 295 SUPERFAMILY Winged helix DNA-binding domain 146 215 IPR036390 -
Cpe01g00396 295 CDD SANT_TRF 6 56 - -
Cpe01g00396 295 Coils Coil 118 141 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g00396 Cpe14g00260 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00396 Cpe-Chr1:2296937 Cpe02g01732 Cpe-Chr2:14178581 1.76E-32 dispersed
Cpe01g00396 Cpe-Chr1:2296937 Cpe10g00484 Cpe-Chr10:2853798 2.15E-57 wgd
Cpe01g00396 Cpe-Chr1:2296937 Cpe14g00260 Cpe-Chr14:1500414 1.21E-121 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48745 PF00538 Linker_histone 2.20E-08 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00396 K09422 - csv:101218411 332.413