Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00397 ATGCAAAAATATCATATGAAACAGTGTGTAGCTATGCCATGGAGGGTTCATCATGGAGGAGGGATCATAGTGAATCCAGAGTTCAACAATGGAACTGAAGGATGGAAAGTATATGGAGGAGGAGAAATAAAGCTAGGGTGGTTGAAACAAGGCAACGACACCAATACCTTCATTGTAGCTCACAAGAGGACTCAACCAAGGGATAGTCTCTATCAGTTGGTTCATCTCCAATATGAAAAGCTCTATAGTTTCTCTGCTTGGGTTCGACTAAGTGAAGGGAACGCACCTGTGGCTGTTCTATACAGAAATAGTGAAGGGGGTGAGATTCGTAATGTTGGTGAAACCATAGCCCAGCAGGGCTGCTGGAGTTTGTTCAAAGGTGGCTTTGTCTCTAATTTTACAGGCCAGGCTGAGCTTTTTTTTGAGAGTACAAATACGACAGCAGATATTTGGATTGATAATGTCTCACTGCAACCATTTACAAAGGAACAATGGCGATCCCACCAAGAAGAAAGTATTAACAAGGTGAGGAAAAGCAAGGTGAGGCTGCAAATAACTCAAGCAGACAACTGTACACTACCAGGTGCGAAAGTCTTCCTCGACCAGAAAAAAAGAAACTTCCCATTAGGGGCAGGAATGAACAGCCATATCCTTTCCAGCAAAAGATACCAACAATGGTTTGCATCAAGATTTGATTATGCCACTTTTACCAATGAACTTAAGTGGTATAGCAATGAGAAAGTACAAGGCCAAGAAAACTACACCATCCCTGATGCAATGCTTAAGTTTGCCCGTCGTAATGGGATTAAAGTCAGAGGACACAACATTTTCTGGGCCGATCCCGTTTATCAGCCAGAATGGGTGAAGTCACTCAGCCCTAAAGATTTGATGAAAGCAGCCAATAGAAGAATCAAGTCCGTGGTTAAGAGATACTCCGGAGAGTTTATTCACTGGGATGTCATGAACGAAAACGTGCACCACAGACTCTTCGAGGACAAACTTGGTGAAAATGCCTCTGCAATGTACTTCAAGATAACACATAAACTAGATAAGAAACCACTTCTTTTCCTCAACGAATTCAATGCCATGGAACATGATTACGAAAAGAAAGCAACCCCAGCTAACTACAGAAAGAGACTCTTCCAAATCCTATCGTATCCCGGGAACGAAAATATTCCAGCAGGAATCGGCTTGCAGGGCAACTTCGGCCCTGATCCACCAAACCTACCATACATGAGATCCGCATTGGACTATCTAGGATCAACAGGCTACCCCATATGGATCACAGAAGTGTATTATAAAGAAGGCCCAAATCAGGCACAATTCTATGAAGAAGTTTTAAGAGAAGGATACGCACATCCTGCCGTGAAGGGGATAATCACATTTGCAGGCCCATTATCGGCGAATTTCTTTACCTTGCCGCTTGTGGATCTGAATTTCAAGAACACCCCAGCAGGAGACGTTGTCGATAAGCTTCTTGCTGAATGGAAATCGCCCAGTTTGGAAATGACAGCCGACGGTGAAGGTTTGGTTGAAGCTTTGTTGTTCCATGGAGATTACAATGTAACAGTGCAACACCCTGTAACCAAATCCGCCACTTCTGTTAGCATTAGAGTGTTGGAAGATGCCGCTTGTCAGACCTTCAACGTCCAGCTCCCTAATAATTGA 1668 43.53 MQKYHMKQCVAMPWRVHHGGGIIVNPEFNNGTEGWKVYGGGEIKLGWLKQGNDTNTFIVAHKRTQPRDSLYQLVHLQYEKLYSFSAWVRLSEGNAPVAVLYRNSEGGEIRNVGETIAQQGCWSLFKGGFVSNFTGQAELFFESTNTTADIWIDNVSLQPFTKEQWRSHQEESINKVRKSKVRLQITQADNCTLPGAKVFLDQKKRNFPLGAGMNSHILSSKRYQQWFASRFDYATFTNELKWYSNEKVQGQENYTIPDAMLKFARRNGIKVRGHNIFWADPVYQPEWVKSLSPKDLMKAANRRIKSVVKRYSGEFIHWDVMNENVHHRLFEDKLGENASAMYFKITHKLDKKPLLFLNEFNAMEHDYEKKATPANYRKRLFQILSYPGNENIPAGIGLQGNFGPDPPNLPYMRSALDYLGSTGYPIWITEVYYKEGPNQAQFYEEVLREGYAHPAVKGIITFAGPLSANFFTLPLVDLNFKNTPAGDVVDKLLAEWKSPSLEMTADGEGLVEALLFHGDYNVTVQHPVTKSATSVSIRVLEDAACQTFNVQLPNN 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2308688 2312061 - Cp4.1LG01g02580.1 Cpe01g00397 461710

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00397 555 Gene3D - 16 160 - -
Cpe01g00397 555 Pfam Carbohydrate binding domain 21 144 IPR003305 GO:0016798
Cpe01g00397 555 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 194 492 IPR001000 GO:0004553|GO:0005975
Cpe01g00397 555 PANTHER HYDROLYZING O-GLYCOSYL COMPOUNDS, PUTATIVE-RELATED 6 551 - -
Cpe01g00397 555 SUPERFAMILY Galactose-binding domain-like 20 159 IPR008979 -
Cpe01g00397 555 PANTHER GLYCOSYL HYDROLASE 6 551 IPR044846 GO:0004553|GO:0005975
Cpe01g00397 555 Gene3D Glycosidases 198 501 - -
Cpe01g00397 555 SMART glyco_10 240 491 IPR001000 GO:0004553|GO:0005975
Cpe01g00397 555 Pfam Glycosyl hydrolase family 10 204 449 IPR001000 GO:0004553|GO:0005975
Cpe01g00397 555 SUPERFAMILY (Trans)glycosidases 193 498 IPR017853 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00397 - - - cmax:111482849 1085.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00397 Cpe-Chr1:2308688 Cpe01g00400 Cpe-Chr1:2318299 0 dispersed
Cpe01g00397 Cpe-Chr1:2308688 Cpe01g00398 Cpe-Chr1:2313351 0 tandem
Cpe01g00397 Cpe-Chr1:2308688 Cpe15g00436 Cpe-Chr15:5495882 5.93E-158 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g716 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00976 Cam10g0999 Cec10g1029 Cco10g0992 Clacu10g1020 Cmu10g1803 Cre10g1177 . . . . . . . . . . . . . . . . . Cmo04g00475 . . . . Car19g00407 . Cpe01g00397 . . . . . . . . . . . . . . Lsi03g01015 . . Cme07g02196
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002470 0 2 1 0 1 1 1 1 1 2 1 2 3 2 2 4 2 3 4 1 2 3 2 4 2 2 2 4 2 3 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00397 Cpe_Chr01 FPKM 1.125683 1.012365 4.684652 4.240152 8.68926 6.697544 9.411623 7.816276 7.173305 9.768298