Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00400 AAGTTCATAACCGTCCGAAGTTTTTCCTATGATTATTATGCAACAACTGAGTGTCTGGTGAAGCCAAGAGGAGTTCGTAATGGAGGAGGGATCATATTGAATCCAGAGTTCAACAATGGAATTGAAGGGTGGAAAGTGTTTGGAGGAGGCGAAATAAAGCAAGGGTCTTTGAAACAAGACAACCAAATCAATAGCTTCATTGTAGCTCACAAGAGGGCGCACCCAAGGGATAGTCTCTATCAGTTGGTTCATCTCCAACATGGAAAGCTCTATAGTTTCTCTGCTTGGGTTCGACTAAGTGAAGGAAGCGCACCTGTCGCTGTTCTATTCAGAAACAGTAAAGATGGTCAGATTCTTCATGGTGGTGAAACCAGAGCCAAGCAGGGCTGCTGGAGTTTGCTCAAAGGTGGCATTGTCTCTGATTTCACAGGCCATGCGGAGGTCTTTTTTGAGAGTGAAAATACATCAGCAGAAATTTGGATCGATAATGTCTCACTGCAACCATTTACAAAGGAGCAATGGCGATCCCACCAAGACAGAAGCATTAACGAGGTGAGGAAAAGCAAGGTGAGGCTGCAAATAACTCAAGCAGACAACAGTAAACTAGCAGGTGCAAAAGTCTTCCTCGACCAGAAAAAACCAAACTTCCCATTTGGGGCAGGAATGAACCACCACATTCTCTCCAGCAAAGAATACCAAGATTGGTTTGCATCAAGATTTTCTTATGCCACTTTTACAAATGAACTTAAGTGGTATAGCACTGAGATAGAACCAGGCAAAGAGAACTACACCATCCCTGATGCGATGCTTGAGTTTGCCAATCAACATGGTATTTCAGTAAGAGGACACAACATTTTCTGGGACAATCCCAAGTTTCAGCCACAATGGGTCAAGTCACTCTCCCCTGCAGATTTGAAGATAGCAGCAGAAAAAAGAATCAACTCCGTGGTTAAGAGATATTCTGGTAAGTTTATCCACTGGGACGTCATGAATGAAAATGTACACTTCAGATACTTTGAGGACAAACTCGGTGAAAATGCCTCAGCAGAGTACTTCAACACAGCACATAAACTTGACAGTAAGACACTTCTTTTCGTGAATGAATACAATACCATGGAACATGCTAGTGAAACGACAGCAACCCCGGCTAACGTAAGAAAGAAACTCTTCCAAATCCTATCATATCCCGGGAATGAAAATATTCCAGCAGGAATCGGCTTGCAGGGCAACTTCGGCCCTGATCCGCCAAACCTACCATACATGAGATCCGCATTGGACTATCTAGGATCAACAGGCTACCCCATATGGATCACAGAAGTGTTTTATTACAAAACTCCAAATCAGGCACAATACTATGAGGAAGTTCTAAGAGAAGGATACGCACATCCTGCAGTGAAGGGCATAATCACATTTGCAGGCCCATTATCGGCGAATTTCACTACCCTGCCGCTTGTGGATCTGAATTTCAAGAACACCCCAGCAGGAGACGTTGTCGATAAGCTTCTTGCTGAATGGAAATCACCCAGCTTGGAAATTACAGCCGATGGCGAAGGTTTCGTTGAAGCTTTGTTGTTCCATGGAGATTACAATGTAACAGTGCAGCACCCTGGAAACAAATCCGCCACGTCTGTTAGCATTAGAGTGTCTGAAGATGCCGCTTATCAGACCTTCAATGTCCAACTCAGCAATAATTAA 1695 43.78 KFITVRSFSYDYYATTECLVKPRGVRNGGGIILNPEFNNGIEGWKVFGGGEIKQGSLKQDNQINSFIVAHKRAHPRDSLYQLVHLQHGKLYSFSAWVRLSEGSAPVAVLFRNSKDGQILHGGETRAKQGCWSLLKGGIVSDFTGHAEVFFESENTSAEIWIDNVSLQPFTKEQWRSHQDRSINEVRKSKVRLQITQADNSKLAGAKVFLDQKKPNFPFGAGMNHHILSSKEYQDWFASRFSYATFTNELKWYSTEIEPGKENYTIPDAMLEFANQHGISVRGHNIFWDNPKFQPQWVKSLSPADLKIAAEKRINSVVKRYSGKFIHWDVMNENVHFRYFEDKLGENASAEYFNTAHKLDSKTLLFVNEYNTMEHASETTATPANVRKKLFQILSYPGNENIPAGIGLQGNFGPDPPNLPYMRSALDYLGSTGYPIWITEVFYYKTPNQAQYYEEVLREGYAHPAVKGIITFAGPLSANFTTLPLVDLNFKNTPAGDVVDKLLAEWKSPSLEITADGEGFVEALLFHGDYNVTVQHPGNKSATSVSIRVSEDAAYQTFNVQLSNN 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2318299 2321208 - Cp4.1LG01g02600.1 Cpe01g00400 461713

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00400 564 PANTHER HYDROLYZING O-GLYCOSYL COMPOUNDS, PUTATIVE-RELATED 16 560 - -
Cpe01g00400 564 Pfam Carbohydrate binding domain 30 108 IPR003305 GO:0016798
Cpe01g00400 564 SUPERFAMILY Galactose-binding domain-like 29 168 IPR008979 -
Cpe01g00400 564 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 203 501 IPR001000 GO:0004553|GO:0005975
Cpe01g00400 564 Gene3D - 22 169 - -
Cpe01g00400 564 Gene3D Glycosidases 205 510 - -
Cpe01g00400 564 SUPERFAMILY (Trans)glycosidases 202 507 IPR017853 -
Cpe01g00400 564 Pfam Glycosyl hydrolase family 10 213 468 IPR001000 GO:0004553|GO:0005975
Cpe01g00400 564 PANTHER GLYCOSYL HYDROLASE 16 560 IPR044846 GO:0004553|GO:0005975
Cpe01g00400 564 SMART glyco_10 249 500 IPR001000 GO:0004553|GO:0005975
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00400 - - - cmax:111472552 1096.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00397 Cpe-Chr1:2308688 Cpe01g00400 Cpe-Chr1:2318299 0 dispersed
Cpe01g00400 Cpe-Chr1:2318299 Cpe15g00436 Cpe-Chr15:5495882 1.27E-164 dispersed
Cpe01g00398 Cpe-Chr1:2313351 Cpe01g00400 Cpe-Chr1:2318299 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g710 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1030 Cone10ag1047 Lsi03g00578 . . . . . . . . . . . Sed07g1258 Cmo04g00478 . . . . . . Cpe01g00400 Bhi11g01130 Tan01g0624 Cmetu07g1354 . Hepe07g0408 Mch10g0421 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002470 0 2 1 0 1 1 1 1 1 2 1 2 3 2 2 4 2 3 4 1 2 3 2 4 2 2 2 4 2 3 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00400 Cpe_Chr01 FPKM 4.971008 3.706748 0.115973 0.333605 0.211843 0.146285 0.263865 0.0 0.0 0.0