Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00412 ATGGATTCGGCTTGTTCGAACTTGGACTCAGGCTCAGGGTCGGAAGATCGAGGTAACAATTTCATTGCTATCGATTCGGAGAGTAAGAAGGACGACTCTGGCGAGACTGTTTCTGCAAGCTCAAAAAGTGGAAGAAGTAAGTTTTTGAAAGAGACAAACCAATCCACAATGCACGGTCTTAACAAGTTTACATCGCAAATCAAGAAGCCTCCTCATAGGAAGGTTTCCCCTATCAATTGGTTCCCACGCAAGAAAGTGGACTCTTACTTGAAGAGGAAGATCAAAATGCTGCAGGAAGTAGATGGCCTGAATTTAACACTAGATGAGACTCTAGGTGATTCTAATCCACATTACTCTAGAGTATTGAAAGAAAAAATGGCAGCAAGAGAGGCTGCACATATAGCACTGGAAGCTAGAAAAGCAGCATTGGTCGAAACCTCTTGGTGTAGAATACTCCAAGCGGCTAGAATTCAATGTAAAGAAGCTTTAGACCAGATGTACAGGGCTGAGAAAACTGCAGCTGAAGCTTTTGAAGAAGCTGCGGCTATGGGAGTGATCATGTTTGATACACCAAATTGTCCACAGAAGACTTACAAAATGGAAACCTCGTCTTCTAGTGGTGCTGGGTCTACAACTCACACCATCACAGCCTCTTTTGAGACAGAATTTGAGGTTGATAAGGAAGTGGCTGCAGCAGTAAAAACAGCATTAGTTAGGCTTGCGAATTGTTCTTTGAAAGAAGATGACTTTAAAGAGCTTTTACGAAAAATCTCTCAGAACCCAGATAGTGATAATAATGTAGACTCATCTGAACTTTCTACTGAATGTGAATCAGAGAATGACTTGGATCTTGATAAAGCGCCTCGAAAGGATGATTTAATAAGCTCTCACAACTTGGATTTACATTTGAAACATAAAACTTTTGAGAAGGAGACCAAGATTGAGGACTTGATGTATGAAAGGCTTAGGCGTTTGAAAGAAGATGAACTTTCTTCTCTTGCAACCATAGTAGCTACTTGTGGTTTGAATGCCGCCTTGACCGAGGTAGAAAGTGGGAAGCTTCATGATGCAGGTTCCTCTGCAGTTCAATCCTCTGTTTCAGCTCTTAACCTTCCTTGGAGAATGCCCTCTGCTGGTTCTGGAAATTACTTCAATAATTTGCACAATGGGAGGAAGCAAGCTGAGTCAGAACTTCCCAGTCTAGACAAGTTCTTGGTAAAGCATGTGACTAAATTGGAAAGAGAGGTGCTTGAAGCAAAGAATAGCAGAAAGAACGAAGAAAAGGAATTGACCTCAGAGAACTCGGAAACAACGATGGAAGGGAAGATCGACTTAAATAGGTCGCAAAACCTTCAAAATTTTAGCAGTGTTCATGACAAGAAAGTTGTTCCTAACTTGGAAATTATACTGACAAAGCCACCTTCAGAACTTGAGAAGGAAGTTAAAGAGACTAATTGCAGGGGTGGAGAAGAACTCAAGATCCATAGCAACAAGTTGCAGGCAAGGCGTAAAGAAGTTGTTTCAGCAGTTCCTAGTCTTGATAAGTATCTCGTGAAACATGTCTCACGACTTGAAAAAGAAGTACAAGAAGCAAAAAATAGAAGAAAAGTTGAGCGGAGCGAAGAAAATCGGGACATTGACACAGAGGAAAAGGAAAATGTTAGTATGCCAAAGTCTTCACTGAAGATGGGAAGGGAAAGGGAAGACAGCCTAGATAAGATCTTAGTGAAGCCGGTGCAAAGGCTGGAAAGGGAAAAGATGCTGGCCGTGTTGGCTGAAAGTAACCATGATCAGCAAAGACATAATAAGAAACAGGTGGTGAATAACCGCACACCTGATTGCCAGAGCTTGGACAAAATTTTAGTAAAGCACGTCTCAAGACTGGAGAAAGAGAAAATGAAATGCAAACCAGATAACTTAAAGAGAAGTGAGAAAAGTAAGCATTCAGAGATCAATGGAGAAGGTGGTGGTGGTGGGGGTTTGGGAGATATTCTGGTTAAACATAAATCAAGACTCGAACGAGAGAAGACGATGTCGTCGATGTCGTCTTCTCAGGAACCAGAAAATCAGAAGAGAAACTTTCTATCGCGTCGTGAAGCTAGGGAGAGAGATCTTCAGTCAGCCTGGGGAGGCTTAAGTTTGGGAGATTCCATGAGACCACATCTCTCCAAACTTGAACGAGACAAGGCTGCCTGGATCAAAGCTGAAGAGGAGGAAAGGAAGCAAGTTTTGAACCAAGTGTAG 2244 42.11 MDSACSNLDSGSGSEDRGNNFIAIDSESKKDDSGETVSASSKSGRSKFLKETNQSTMHGLNKFTSQIKKPPHRKVSPINWFPRKKVDSYLKRKIKMLQEVDGLNLTLDETLGDSNPHYSRVLKEKMAAREAAHIALEARKAALVETSWCRILQAARIQCKEALDQMYRAEKTAAEAFEEAAAMGVIMFDTPNCPQKTYKMETSSSSGAGSTTHTITASFETEFEVDKEVAAAVKTALVRLANCSLKEDDFKELLRKISQNPDSDNNVDSSELSTECESENDLDLDKAPRKDDLISSHNLDLHLKHKTFEKETKIEDLMYERLRRLKEDELSSLATIVATCGLNAALTEVESGKLHDAGSSAVQSSVSALNLPWRMPSAGSGNYFNNLHNGRKQAESELPSLDKFLVKHVTKLEREVLEAKNSRKNEEKELTSENSETTMEGKIDLNRSQNLQNFSSVHDKKVVPNLEIILTKPPSELEKEVKETNCRGGEELKIHSNKLQARRKEVVSAVPSLDKYLVKHVSRLEKEVQEAKNRRKVERSEENRDIDTEEKENVSMPKSSLKMGREREDSLDKILVKPVQRLEREKMLAVLAESNHDQQRHNKKQVVNNRTPDCQSLDKILVKHVSRLEKEKMKCKPDNLKRSEKSKHSEINGEGGGGGGLGDILVKHKSRLEREKTMSSMSSSQEPENQKRNFLSRREARERDLQSAWGGLSLGDSMRPHLSKLERDKAAWIKAEEEERKQVLNQV 747
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2379748 2383533 - Cp4.1LG01g02520.1 Cpe01g00412 461725

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00412 747 MobiDBLite consensus disorder prediction 420 435 - -
Cpe01g00412 747 MobiDBLite consensus disorder prediction 632 651 - -
Cpe01g00412 747 PANTHER MYOSIN-2 HEAVY CHAIN-LIKE PROTEIN 1 743 - -
Cpe01g00412 747 MobiDBLite consensus disorder prediction 529 567 - -
Cpe01g00412 747 Coils Coil 521 541 - -
Cpe01g00412 747 MobiDBLite consensus disorder prediction 593 607 - -
Cpe01g00412 747 MobiDBLite consensus disorder prediction 593 612 - -
Cpe01g00412 747 Coils Coil 409 436 - -
Cpe01g00412 747 MobiDBLite consensus disorder prediction 259 273 - -
Cpe01g00412 747 MobiDBLite consensus disorder prediction 1 78 - -
Cpe01g00412 747 Coils Coil 152 172 - -
Cpe01g00412 747 MobiDBLite consensus disorder prediction 632 721 - -
Cpe01g00412 747 MobiDBLite consensus disorder prediction 1 21 - -
Cpe01g00412 747 MobiDBLite consensus disorder prediction 37 63 - -
Cpe01g00412 747 MobiDBLite consensus disorder prediction 257 281 - -
Cpe01g00412 747 MobiDBLite consensus disorder prediction 691 705 - -
Cpe01g00412 747 MobiDBLite consensus disorder prediction 22 36 - -
Cpe01g00412 747 Coils Coil 722 742 - -
Cpe01g00412 747 MobiDBLite consensus disorder prediction 420 439 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00412 - - - mcha:111017696 1068.53
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g00412 Cpe14g00275 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00412 Cpe-Chr1:2379748 Cpe14g00275 Cpe-Chr14:1586492 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g681 Blo02g00938 . . Bda08g00672 . . . . . . . . . . . . . . . . . . . . Cla10g01008 Cam10g1031 Cec10g1062 Cco10g1026 Clacu10g1048 Cmu10g1832 Cre10g1204 . . Cone3ag1018 . . . . . . . . . . Bpe05g00481 . . . Cmo04g00492 Cmo16g00350 . . . . Cpe14g00275 Cpe01g00412 Bhi11g01151 . . . . . . . . . . . . . Lsi03g01036 . . Cme07g02168
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006087 2 6 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00412 Cpe_Chr01 FPKM 4.090514 4.176165 2.00439 2.79425 2.091114 2.312716 2.85212 3.333638 3.666167 4.465478