Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00416 ATGGAAGAAAGAGATGAATATACAGAATCAAGAACTATTAATAAATCTGCAGCCGTACAAGAAGCCAAGGCCAGTGTTGAAGTTGAAGTGCTAACTAGTCTTGCAAATGAGCAAATGCATTCAGCTCCTAACTATCTGGAATTGGGAACAATTCGAGACTGGACCAGTAAAACTGGCAGTCCAGATGAAGAAAAACCAGGGGTCAAACAGAATATGGAGGAAGATAGGAGGGAACTTGGTTTGGGAGAAGCCCACAGTGGATTACCAGAAAAAAGCAGTCAGACTATCTCTAAACTTGCTGATAATGATCAAGGTGAAGCTGGCAATTTATTATCCAGCGATAAAGATACTGAAAATTTAATATTACCTATTGAAGTTGAGACAACGGCTCTTCTTAATGAGTGCTTGGAACCTCCAACTGAAGATGACAACAAAAATTATATCGAACAGGCGAACCCTCCTATAGAAGATTCAATCCAAAATACTTATATAAAAAATTTAAATATGGTCCCCGATAATTCTCCAGAGTTGGGTTGCAAGGATAAGAGAGTTTTAAAATCAAAAAAGAAAAATTATATCTTAAGGTCCCTTGTAAGTAGTGACAGAGTTTTGCGTTCAAGGACCCAAGATAAAGCTAAAGCTCCTGAACCAAGTAATGACTTGAGTAATGTGACTGCTGGAGAGGAGGGAAAAGGGAAGAAGAAGAAGAAGAATAGAAAGATAAAGGGAAAGGGAGCAAGAGTTGATGAGTTTTCATCAATCAGGAATCATTTGAGATATTTAGTGAACCGCATCAAATATGAACAGAGCCTGATTGAAGCTTATTCTAGCGAAGGCTGGAAAGGGTTCAGGAAGAAAACTCCCATTCCCTGGCAGTTGCAGAAGTTGATAAAATTAACTCCAGTGCAGCATCCTGCTAATGAGAATTCGAAAACGGTATCAGGAAAGAATAGGAGTAGTCAAGGAGATAAGTTGGTATTCTTAGGGGACAATATGGAAGAAAGAGATGAATATACAGAATCAAGAACTATTAATAAATCTGCAGCCGTACAAGAAGCCAAGGCCAGTGTTGAAGTTGAAGTGCTAACTAGTCTTGCAAATGAGCAAATGCATTCAGCTCCTAACTATCTGGAATTGGGAACAATTCGAGACTGGACCAGTAAAACTGGCAGTCCAGATGAAGAAAAACCAGGGGTCAAACAGAATATGGAGGAAGATAGGAGGGAACTTGGTTTGGGAGAAGCCCACAGTGGATTACCAGAAAAAAGCAGTCAGACTATCTCTAAACTTGCTGATAATGATCAAGGTGAAGCTGGCAATTTATTATCCAGCGATAAAGATACTGAAAATTTAATATTACCTATTGAAGTTGAGACAACGGCTCTTCTTAATGAGTGCTTGGAACCTCCAACTGAAGATGACAACAAAAATTATATCGAACAGGCGAACCCTCCTATAGAAGATTCAATCCAAAATACTTATATAAAAAATTTAAATATGGTCCCCGATAATTCTCCAGAGTTGGGTTGCAAGGATAAGAGAGTTTTAAAATCAAAAAAGAAAAATTATATCTTAAGGTCCCTTGTAAGTAGTGACAGAGTTTTGCGTTCAAGGACCCAAGATAAAGCTAAAGCTCCTGAACCAAGTAATGACTTGAGTAATGTGACTGCTGGAGAGGAGGGAAAAGGGAAGAAGAAGAAGAAGAATAGAAAGATAAAGGGAAAGGGAGCAAGAGTTGATGAGTTTTCATCAATCAGGAATCATTTGAGATATTTAGTGAACCGCATCAAATATGAACAGAGCCTGATTGAAGCTTATTCTAGCGAAGGCTGGAAAGGGTTCAGCTCAGATAAATTGAAGCCTGAAAAGGAACTTCAACGTGCATCAAATGAAATAATGCGACGCAAATTGAAAATAAGAGATCTATTTCAACGTATTGATGCACTCTGTTCTGAAGGAAGGTTTTCTGAAGCTTTATTCGATTCTGAAGGCCAGATAGATAGTGAGGATATATTCTGTGGAAAATGTGGATCCAAGGAACTGTCCCTTGAGAATGACATCATACTATGTGACGGTGTCTGTGATCGTGGGTTCCACCAGTTCTGTTTAGAACCACCTTTGCTAAACTCAGACATCCCACCAGATGACGAGGGATGGCTATGCCCTGGATGTGATTGCAAAGATGATTGCATTGATCTTCTTAATGAATTTCAAGGATCAAATCTTTCTATTACTGATGGTTGGGAGAAAGTCTTTCCCGAGGCAGCGGCAGCAGCAGCTGGCCGGAGTTCTGATCACACCATGAGTCTCCCTTCAGATGATTCTGATGATGGTGATTATGATCCTGATGTTCCAGATGCTATTGACCAGGATGGTGAATCGAGTTCTGATCACTCAAGCTCTGATCAATCAAGTTCTGATCTATCAAGTTCTGATAAATCTGGGTATGCTTCTGCTTCTGCTTCTGAGGAATTGGAGGCTCCACCCAATGATGACCAGTACTTGGGTCTCCCTTCAGATGACTCGGAGGATGATGATTATGATCCTGGTGCTCCAGTGCGTGATGAAGGTGTTGGACAGGAAAGTTCAAGTTCTGACTTTACATCTGATTCTGAGGATCTAGCTGCACTTGTCAATAACGGGTCGTCTAAAGATGATAACATAGCGTCTTCTCCATTAAATAATACTGTGCCTGTAAGAAACTCTAATGGGCAAAGTTCTGGACGCGGTCCTAACAAGAGTGCACAACATAACAAGTTATCAAGTCTAGTAGGGTCAGGTCCTGACGAGGGTGGTCTTGAACTAGTTTCGGGAAGAAGACATGTGGAGCGATTGGATTACAAGAAGCTTCATGATGAGACATTCGGGAATGTTCCTACCGACTCGAGCGATGACACATATGGCAGTGATTCTATAGATTCAAGTGATGACAGAGGTCGTGGTAGGAGTACAAGGAAGGGAAGTCCTAAAAACCCGGTTCCTGCATTGTCAAGAAATGGAACTGATGATTTGAAAAATATAAAAACTAAATGCAGTTCTAAGAGAACTCGTCAAAAGCCAGCTGCTGAAAATATGGATAATTCTGTGACAAAAACACCTGAAGGCACTTTGAAATCTAGTTCTTCTGTTAGACGAACCACTTCGTCATCACATAGAAGGCTCAGTCAACCTACATTGGAGAGACTCCTTGCATCATTCCAAGAAAATCAGTATCCTGAACGAGCTACAAAGGAGAGTTTGGCACGAGAACTAGGGCTCAGTCTGAAGCAGGTTAGTAAATGGTTTGAGAATACACGTTGGAGCACACGCCATCCCTCCAGTGAAGCTAATAAAGCAAGGAGTGCTTCAAGAATGGGCACTCAATCATCTCAGACAAGTAGAAAACCTCCCAAGCCTGAGCAAGAATCTGGTGCATGTTTCAGAGACACCTGTAGCAATGGTGCTCAGCATCAAGAATCACCAAAGGCAATTAGTGTTGTGGCCCCATGTCAGAGTGGGGTTACAGGGGATGACAAATCAGCGAATCAGAGAACTAAAAGGCCAGAATCTACTGCTACAAAATCCAGAAAACGGAAGGGCAGGTCAGATCAAGTGGCATCCCGTTCAAAGGACAGAAAGAAATCACGAAAGCCTCCAGCTAAGTCATCAAAGGTTGATGAAATTCAAACAGCTGATAAGGTTAAGAAGAGGAGGAGGAAATCCATGTAG 3708 41.13 MEERDEYTESRTINKSAAVQEAKASVEVEVLTSLANEQMHSAPNYLELGTIRDWTSKTGSPDEEKPGVKQNMEEDRRELGLGEAHSGLPEKSSQTISKLADNDQGEAGNLLSSDKDTENLILPIEVETTALLNECLEPPTEDDNKNYIEQANPPIEDSIQNTYIKNLNMVPDNSPELGCKDKRVLKSKKKNYILRSLVSSDRVLRSRTQDKAKAPEPSNDLSNVTAGEEGKGKKKKKNRKIKGKGARVDEFSSIRNHLRYLVNRIKYEQSLIEAYSSEGWKGFRKKTPIPWQLQKLIKLTPVQHPANENSKTVSGKNRSSQGDKLVFLGDNMEERDEYTESRTINKSAAVQEAKASVEVEVLTSLANEQMHSAPNYLELGTIRDWTSKTGSPDEEKPGVKQNMEEDRRELGLGEAHSGLPEKSSQTISKLADNDQGEAGNLLSSDKDTENLILPIEVETTALLNECLEPPTEDDNKNYIEQANPPIEDSIQNTYIKNLNMVPDNSPELGCKDKRVLKSKKKNYILRSLVSSDRVLRSRTQDKAKAPEPSNDLSNVTAGEEGKGKKKKKNRKIKGKGARVDEFSSIRNHLRYLVNRIKYEQSLIEAYSSEGWKGFSSDKLKPEKELQRASNEIMRRKLKIRDLFQRIDALCSEGRFSEALFDSEGQIDSEDIFCGKCGSKELSLENDIILCDGVCDRGFHQFCLEPPLLNSDIPPDDEGWLCPGCDCKDDCIDLLNEFQGSNLSITDGWEKVFPEAAAAAAGRSSDHTMSLPSDDSDDGDYDPDVPDAIDQDGESSSDHSSSDQSSSDLSSSDKSGYASASASEELEAPPNDDQYLGLPSDDSEDDDYDPGAPVRDEGVGQESSSSDFTSDSEDLAALVNNGSSKDDNIASSPLNNTVPVRNSNGQSSGRGPNKSAQHNKLSSLVGSGPDEGGLELVSGRRHVERLDYKKLHDETFGNVPTDSSDDTYGSDSIDSSDDRGRGRSTRKGSPKNPVPALSRNGTDDLKNIKTKCSSKRTRQKPAAENMDNSVTKTPEGTLKSSSSVRRTTSSSHRRLSQPTLERLLASFQENQYPERATKESLARELGLSLKQVSKWFENTRWSTRHPSSEANKARSASRMGTQSSQTSRKPPKPEQESGACFRDTCSNGAQHQESPKAISVVAPCQSGVTGDDKSANQRTKRPESTATKSRKRKGRSDQVASRSKDRKKSRKPPAKSSKVDEIQTADKVKKRRRKSM 1235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2411317 2422950 + Cp4.1LG01g02480.1 Cpe01g00416 461729

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00416 1235 MobiDBLite consensus disorder prediction 1095 1235 - -
Cpe01g00416 1235 MobiDBLite consensus disorder prediction 88 116 - -
Cpe01g00416 1235 MobiDBLite consensus disorder prediction 1139 1153 - -
Cpe01g00416 1235 ProSiteProfiles 'Homeobox' domain profile. 1045 1105 IPR001356 GO:0003677
Cpe01g00416 1235 MobiDBLite consensus disorder prediction 1095 1131 - -
Cpe01g00416 1235 SUPERFAMILY FYVE/PHD zinc finger 662 730 IPR011011 -
Cpe01g00416 1235 CDD PHD_PRHA_like 672 724 IPR045876 -
Cpe01g00416 1235 ProSitePatterns Zinc finger PHD-type signature. 673 724 IPR019786 -
Cpe01g00416 1235 Pfam PHD-finger 672 727 IPR019787 -
Cpe01g00416 1235 SMART HOX_1 1048 1109 IPR001356 GO:0003677
Cpe01g00416 1235 MobiDBLite consensus disorder prediction 57 84 - -
Cpe01g00416 1235 MobiDBLite consensus disorder prediction 759 1081 - -
Cpe01g00416 1235 ProSiteProfiles Zinc finger PHD-type profile. 670 727 IPR019787 -
Cpe01g00416 1235 MobiDBLite consensus disorder prediction 388 404 - -
Cpe01g00416 1235 MobiDBLite consensus disorder prediction 858 923 - -
Cpe01g00416 1235 MobiDBLite consensus disorder prediction 535 575 - -
Cpe01g00416 1235 CDD homeodomain 1052 1106 IPR001356 GO:0003677
Cpe01g00416 1235 MobiDBLite consensus disorder prediction 797 818 - -
Cpe01g00416 1235 PANTHER HOMEOBOX PROTEIN HAT3.1 140 283 - -
Cpe01g00416 1235 PANTHER HOMEOBOX PROTEIN HAT3.1 471 1120 - -
Cpe01g00416 1235 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 140 283 - -
Cpe01g00416 1235 MobiDBLite consensus disorder prediction 53 116 - -
Cpe01g00416 1235 SMART PHD_3 672 725 IPR001965 -
Cpe01g00416 1235 MobiDBLite consensus disorder prediction 1188 1203 - -
Cpe01g00416 1235 ProSitePatterns 'Homeobox' domain signature. 1080 1103 IPR017970 GO:0000981|GO:0006355
Cpe01g00416 1235 SUPERFAMILY Homeodomain-like 1041 1105 IPR009057 -
Cpe01g00416 1235 Gene3D - 1046 1117 - -
Cpe01g00416 1235 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 471 1120 - -
Cpe01g00416 1235 MobiDBLite consensus disorder prediction 204 246 - -
Cpe01g00416 1235 MobiDBLite consensus disorder prediction 934 955 - -
Cpe01g00416 1235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 666 729 IPR013083 -
Cpe01g00416 1235 MobiDBLite consensus disorder prediction 1213 1227 - -
Cpe01g00416 1235 MobiDBLite consensus disorder prediction 774 790 - -
Cpe01g00416 1235 MobiDBLite consensus disorder prediction 1022 1074 - -
Cpe01g00416 1235 Pfam Homeodomain 1052 1100 IPR001356 GO:0003677
Cpe01g00416 1235 MobiDBLite consensus disorder prediction 385 404 - -
Cpe01g00416 1235 MobiDBLite consensus disorder prediction 1003 1021 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00416 - - - cpep:111793998 1624.76
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g00416 Cpe14g00278 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00416 Cpe-Chr1:2411317 Cpe04g01322 Cpe-Chr4:10856640 4.46E-06 dispersed
Cpe01g00416 Cpe-Chr1:2411317 Cpe14g00278 Cpe-Chr14:1612991 1.12E-112 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g656 Blo02g00944 Blo03g00085 Bda06g01216 Bda08g00666 Bpe07g00262 . Bma05g00672 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1009 Cone10ag1026 . . . . . . . . . Bpe05g00488 . . . Cmo04g00496 Cmo16g00355 . . . . Cpe14g00278 Cpe01g00416 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003741 2 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48747 PF00628 PHD 4.60E-10 CL0390 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00416 Cpe_Chr01 FPKM 0.0 0.0 0.134073 0.0 2.579151 2.281024 3.016923 0.271816 0.516308 0.531633