Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00421 ATGGCCGAGACGTCTTCTTCATCTGTAACTTTAAGTTTCCTTTACTTTACATTCTTTCCTCAAATTCTCTATTTATTTGCTTCCGATTCATTCACATTTCACCAACTCTGTTTCTCTTTCCCTTCCATTGCTTCATCCATATTCTTCCTCTGTTCCAAGAAAATGGGAAGCATTGAAGAACAGAGGACTGTAACAGGGCTCGCCGCCAAAGACCCATCCGGGATTCTGTCTCCCTACACTTATACTCTCAGAAACACCGGCCCTGAAGATGTTTTCATTAAAGTGATTTGCTGTGGAGTATGCCACTCTGATCTTCACCAAATCAAAAATGACCTCGGCATGTCCAATTATCCGATGGTTCCTGGACATGAGGTGGTCGGAGAAGTGGTGGAGGTTGGGTCGGATGTTGGTCGGTTTAGAACAGGGGAGTTGGTCGGAGTTGGGTGTATTGTTGGATCTTGTTCGAGTTGTAATCCTTGCAATTCCGATAAGGAGCAGTATTGTAACCGGAGAATCTGGAGTTATAATGATGTGTATCATGATGGCCGTCCCACCCAAGGCGGGTTCTCCTCCGCCATGGTCGTTCACCAAAAATTTGTGGTGAAAATCCCAGAAGGGATGTCGCCGGAGCAGGCGGCGCCGCTGTTGTGCGCCGGAGTGACAGTGTACAGCCCGCTGAGTCACTTTGGGCTGAAACAGAGTGGACTCAGAGGCGGAATTTTGGGGCTAGGCGGCGTGGGGCATATGGGTGTGAAAGTGGCGAAGGCTCTGGGTCACCACGTGACGGTGATAAGCTCGTCGGAGAAGAAGAGGGTGGAGGCTCTGAAAGATCTCGGCGCCGATGAGTACTTGGTTAGCTCCGACAGTACTCAAATGGAACGAGCCATTGATTCGCTGGATTACATCATTGACACAGTCCCTGTTTTTCATCCTCTCGAGCCGTATCTGTCTCTCCTGAAACTCGACGGCAAATTGATCTTGATGGGCGTTATTAATAAGCCATTGCAATTCGTTTCCCCTGTTCTTATGCTCGGGAGGAAGACGATTACAGGGAGCTTCATCGGAAGCATGACGGAGACGCAAGAAGTGTTGGATTTCTTCAAAGAGAAGGAGCTGACCTCCATAATTGAAGTGATAAAGCTCGATTACATTAACGACGCGTTGGAGAGGTTGGAGAAGAACGACGTCAGATACCGGTTCGTTGTCGATGTCGCCGGAAGCAAGTTACCTCAGTGA 1236 48.62 MAETSSSSVTLSFLYFTFFPQILYLFASDSFTFHQLCFSFPSIASSIFFLCSKKMGSIEEQRTVTGLAAKDPSGILSPYTYTLRNTGPEDVFIKVICCGVCHSDLHQIKNDLGMSNYPMVPGHEVVGEVVEVGSDVGRFRTGELVGVGCIVGSCSSCNPCNSDKEQYCNRRIWSYNDVYHDGRPTQGGFSSAMVVHQKFVVKIPEGMSPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKVAKALGHHVTVISSSEKKRVEALKDLGADEYLVSSDSTQMERAIDSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINKPLQFVSPVLMLGRKTITGSFIGSMTETQEVLDFFKEKELTSIIEVIKLDYINDALERLEKNDVRYRFVVDVAGSKLPQ 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2441840 2443597 + Cp4.1LG01g02490.1 Cpe01g00421 461734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00421 411 SMART PKS_ER_names_mod 74 402 IPR020843 GO:0016491
Cpe01g00421 411 PANTHER ALDEHYDE REDUCTASE 60 411 - -
Cpe01g00421 411 CDD CAD1 65 403 - -
Cpe01g00421 411 Gene3D - 68 404 - -
Cpe01g00421 411 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 122 136 IPR002328 GO:0008270|GO:0016491
Cpe01g00421 411 Gene3D - 218 374 - -
Cpe01g00421 411 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 207 372 IPR036291 -
Cpe01g00421 411 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE 2-RELATED 60 411 - -
Cpe01g00421 411 Pfam Alcohol dehydrogenase GroES-like domain 89 203 IPR013154 -
Cpe01g00421 411 SUPERFAMILY GroES-like 71 235 IPR011032 -
Cpe01g00421 411 Pfam Zinc-binding dehydrogenase 245 368 IPR013149 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00421 Cpe-Chr1:2441840 Cpe16g00065 Cpe-Chr16:1275558 1.13E-107 dispersed
Cpe01g00421 Cpe-Chr1:2441840 Cpe10g00530 Cpe-Chr10:3105169 1.60E-114 wgd
Cpe01g00421 Cpe-Chr1:2441840 Cpe14g00281 Cpe-Chr14:1642661 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00421 K00083 - csv:101222395 615.92