Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00424 ATGTCCATGGGATCCAATTCTACTCGTCGCATTTCTGTTCATCAAGTGCTCGGCGGTGGTCCTGTGGCTGATATGCTCCTATGGAAGAAATGGTGTGGTGGTGCTGTCATACTCACGTCTACAACTGCTTTGTGGTACCTGTTTGAAAGAGCCGATTACAACTTCTTATCTTTTGTTGCCAATGTTCTATTGCTTCTTGTCCTCATTCTTTTCGTCTGGGCCAAATCTGCTTCCCTTCTCAATAGACCTCTGCCTCCGCTTCCTGATCTGGAAATTTCTGAGGAATCTGTTTCGATAGTTGCTGATGAACTGCGATTGTGGGTCAATTTTGCACTGTCAATTGCACGCGATATTGCAATAGGAAGAAACCTTAAGCTCTTTCTTCAGGTTGCTCTTGGACTATGGATTTCATCATTCATTGGCAGATTCTTCAATTTTCTTACACTGGTCTATTTTGGGGTCCTTCTCAGTCTTTCAGCTCCGCTAGTGTACGATAAGTACCAGGATCCCATTGATGAAAAGTTGTGTGTAACACATAGATATGTACAAATGCAATACAGGAAGCTTGATGAGAATGTCTTAAGGAAGTTACCATTACCCTTAAACAAGGAGAAGAAGATGCAATAG 627 42.42 MSMGSNSTRRISVHQVLGGGPVADMLLWKKWCGGAVILTSTTALWYLFERADYNFLSFVANVLLLLVLILFVWAKSASLLNRPLPPLPDLEISEESVSIVADELRLWVNFALSIARDIAIGRNLKLFLQVALGLWISSFIGRFFNFLTLVYFGVLLSLSAPLVYDKYQDPIDEKLCVTHRYVQMQYRKLDENVLRKLPLPLNKEKKMQ 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2450337 2455651 + Cp4.1LG01g02500.1 Cpe01g00424 461737

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00424 208 Pfam Reticulon 22 175 IPR003388 -
Cpe01g00424 208 ProSiteProfiles Reticulon domain profile. 22 208 IPR003388 -
Cpe01g00424 208 PANTHER RETICULON-LIKE PROTEIN B11 4 208 - -
Cpe01g00424 208 PANTHER RETICULON 4 208 IPR045064 GO:0009617
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00424 K20723 RTN3; reticulon-3 - csv:101221917 333.954
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00424 Cpe-Chr1:2450337 Cpe05g00366 Cpe-Chr5:2062288 6.04E-47 dispersed
Cpe01g00424 Cpe-Chr1:2450337 Cpe13g00128 Cpe-Chr13:925518 1.82E-48 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g622 Blo02g00842 . . Bda08g00767 . . Bma05g00527 . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag1106 Cone3ag0998 Cone10ag1018 . . . . . . . . . . . . . Cmo04g00507 . . . . . . Cpe01g00424 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004692 3 1 3 1 2 1 2 1 1 1 1 1 2 1 1 1 1 4 1 1 1 1 1 1 1 1 1 3 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00424 Cpe_Chr01 FPKM 0.84764 0.0 0.32898 0.67483 52.9687 51.780964 50.923378 5.350212 5.412496 6.864424