Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00427 ATGGCAATGCATCGCTATGAGCCAGCCGACGATGAAGCCCAAACCCATTTGATTTCGCTCGATTCTCTGTTTTGCGAGGAGGAGAAATGGGAAGAGGAGGAGGAGGAGGAGGAGGATGAAGATGAGCTAGAACAGACCCATCAAGCCCATGTTTTTTCTTTGGATGTTTTGGAGGAAGATCTATTTGGGGAAGATGAACGCCTTCTCTCCTTGTTGTCTAAGGAAACAGAGCAGTTGAAACAGAGCAATCTCAAGCTTGAACCTCTGTTAATGGATCCTTCTGTCTCTGCTGCTCGTTCTTCATCTGTGGAGTGGATGCTTAAAGTTAAATCCCATTATGGGTTTTCGTCTCTCACTGCAATTTTGGCTGTTGCTTATTTCGACAGGTTCCTCTTGAGCTTTCATTTTAGAAGTGACAAGCCATGGATGAACCAGCTTGTGGCTGTCACTTGCCTCTCGTTGGCGGCTAAAGTGGAGGAGGTTGAAGTTCCTCTGCTACTTGACCTTCAAGTGGAGGATGCGAAATTTGTGTTTGAGGCCAAAACCATTCAGAGAATGGAGCTTTTAGTGCTCTCAACTCTTCAATGGAGGATGCATTTGGTTACTTCATATTCATATCTTGACAACATTGTAAGAAGGCTTGGGTTAAAGACCAATCTTCATTTGGAGTTCTTCAAGCGTTCTGAGAATCTCCTCCTTTCTCTTCTCTCAGATTCAAGATTTGTGGGTTATCTTCCATCTGTCTTAGCAACTGCAACAATGATGCACATTATAGAACAGATTGAACCCCATAAGTCAATGGAGCACCAAGATCATCTTCTGGGTGTTCTTAAAATGAGCAAGGACAAAGTGCAAGGCTGTTACAATCTTGTAGTGGATCATTCAAAGGCATGTACCAATGGCTTATATCATTCCATCAATCCCCACAAGCGGAAGTACGAACATCATCAAGCTCCTGATAGCCCAAATGGTGTGATTGATGCTGGTTTCAGTTCAGACAGCTCCAATGATTCATGGGCATTGAGAGCAGCAGCATCAGTTTGTTCTTCACCTGAACCATCTTTCAAGAAGAACAAAACCGAAGAGCCAAGAATGTTATATCATTCTCTGAACAGGAGGGTCTGTTTGGACATTGTTGGCAGCCCTTCTTAG 1152 43.75 MAMHRYEPADDEAQTHLISLDSLFCEEEKWEEEEEEEEDEDELEQTHQAHVFSLDVLEEDLFGEDERLLSLLSKETEQLKQSNLKLEPLLMDPSVSAARSSSVEWMLKVKSHYGFSSLTAILAVAYFDRFLLSFHFRSDKPWMNQLVAVTCLSLAAKVEEVEVPLLLDLQVEDAKFVFEAKTIQRMELLVLSTLQWRMHLVTSYSYLDNIVRRLGLKTNLHLEFFKRSENLLLSLLSDSRFVGYLPSVLATATMMHIIEQIEPHKSMEHQDHLLGVLKMSKDKVQGCYNLVVDHSKACTNGLYHSINPHKRKYEHHQAPDSPNGVIDAGFSSDSSNDSWALRAAASVCSSPEPSFKKNKTEEPRMLYHSLNRRVCLDIVGSPS 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2468894 2471504 - Cp4.1LG01g02390.1 Cpe01g00427 461740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00427 383 Gene3D - 200 289 - -
Cpe01g00427 383 Pfam Cyclin, C-terminal domain 201 317 IPR004367 -
Cpe01g00427 383 PANTHER CYCLIN D3.1 PROTEIN 40 359 - -
Cpe01g00427 383 PANTHER CYCLINS 40 359 IPR039361 -
Cpe01g00427 383 Pfam Cyclin, N-terminal domain 96 198 IPR006671 -
Cpe01g00427 383 ProSitePatterns Cyclins signature. 99 130 IPR006671 -
Cpe01g00427 383 Gene3D - 95 199 - -
Cpe01g00427 383 SUPERFAMILY Cyclin-like 65 199 IPR036915 -
Cpe01g00427 383 Coils Coil 20 40 - -
Cpe01g00427 383 SMART cyclin_7 104 192 IPR013763 -
Cpe01g00427 383 SMART cyclin_7 205 293 IPR013763 -
Cpe01g00427 383 CDD CYCLIN 105 191 IPR013763 -
Cpe01g00427 383 SMART Cyclin_C_2 201 337 IPR004367 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g00427 Cpe15g00473 CCT
Cpe01g00427 Cpe04g00298 CCT
Cpe01g00427 Cpe04g00298 ECH
Cpe01g00427 Cpe15g00473 ECH
Cpe01g00427 Cpe14g00286 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00427 Cpe-Chr1:2468894 Cpe19g00642 Cpe-Chr19:5181481 1.19E-89 dispersed
Cpe01g00427 Cpe-Chr1:2468894 Cpe10g00541 Cpe-Chr10:3185468 4.54E-47 wgd
Cpe01g00427 Cpe-Chr1:2468894 Cpe11g00137 Cpe-Chr11:738016 1.28E-98 wgd
Cpe01g00427 Cpe-Chr1:2468894 Cpe14g00286 Cpe-Chr14:1670885 0 wgd
Cpe01g00427 Cpe-Chr1:2468894 Cpe15g00473 Cpe-Chr15:5737985 1.08E-88 wgd
Cpe01g00427 Cpe-Chr1:2468894 Cpe02g00199 Cpe-Chr2:1031220 1.98E-59 wgd
Cpe01g00427 Cpe-Chr1:2468894 Cpe04g00298 Cpe-Chr4:3757790 1.10E-84 wgd
Cpe01g00427 Cpe-Chr1:2468894 Cpe06g00180 Cpe-Chr6:976067 9.45E-88 wgd
Cpe01g00427 Cpe-Chr1:2468894 Cpe07g00498 Cpe-Chr7:3257734 7.32E-87 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00427 K14505 - csv:101221213 578.556