Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00429 ATGGCTTCTTTCTCTTCTCTTTCAATCCTTCTCCTCCTCCTCCTCCTACTTCATCCTCCTTCTCCGGCGGCTGCCCGGTCCGCCTCCCGGGAGTCACTGGAAATCATCATCGGCGGTGGTACCAAGAATCCGGACCCGAATCCAAAATATCCAACTCCAGCGCCGGAGTATCCACCGCCAACACCGAAGTATCCAACGCCGGCTCCGAAGTATCCGCCGCCAACACCGAAGTATCCACCACCGGCACCGAAGTATCCGCCGCCGCCGCCAGAGTTCGAGAATGAGCGGCTGAGAAAGGCGTATTTCGTGATACAGAGGCTGAGGAAGAAAATCACCGGCGGAAGGATGGACGTGGTGAAGACATGGAAGGGGAAAGACGTGTGCCGGTACAAAGGGTTCCGATGCGACCCTCTTCCGGTGGAGAAAGAGAGGGCTGTTTCTGCAGTGATGTTTAATGGCTTCAAATTTCAAGGTCCAGAGCTCTGTCTGGAAGGATTCATGGACGAATTGGACGATATCGCTGTGTTTCACGCCAATTCCAATTTCTTCCTCGGCCCAATCCCGAAGAAAATCAATCGCCAACGATTCTTCTATGAATTGGATCTCAGCAACAACAAGCTTCCAGGAGCTTCACTGTTGACATTCCTAGACCTCCGATTCAACAACTATTGCGGCCCTATTCCAAAGCAGCTCTTCAACTTAGATATAATCAGCGCGATTTACATAAACAACAACCAATTCAGCTCATCTCTGCCTAGCAATCTCGGCAGAACTCCGGCCAGGTTCCTTACCTTTGCCAACAACCAGTTCACCGGCCAAATTCCGAGGAGCATCGGCGACGCCAAGAAGACAATGGAAGAAATTGTGTTCTTCAACAACAAATTGGACGGGTACTTGCCGTGTGAGATCGGTAACTTGGAGAATGCTGTGCTGTTCGACGCTGGAAAGAATCGGCTCACCGGACCGATTCCGCTGTCGTTTGCTTGCTTGGCTAAGGCGGAGCTGTTGTACTTGGCGGACAACCAGTTGTACGGTCCGGTGCCGGAGGAGATCTGTAAATTGCCTAAACTCGGCAACTTCACATTGAGGAATAATTTCTTCACTAAGGTGGGACCTGCGTGCAAAAAATTGATAAAGAAAAAGATTTTAGACGTTTCGAACAACTGCATTCCCGGGCTTCCAAATCAGAGATGCGAAGAAGACTGTAAAGAGTTTGCATGTAGACCTAAAGACCATGGAGACGACAAGTCGTTCACGTACATTCCTTGCAAAAATAATTACTATCTGCATTCACACGTCTCGAAGCCTAGTGATAATGTAAACTATGTGTCGCCCAAGAGAACCTATGCTGCTCTTGCTCCCGACCCACAATAG 1374 49.78 MASFSSLSILLLLLLLLHPPSPAAARSASRESLEIIIGGGTKNPDPNPKYPTPAPEYPPPTPKYPTPAPKYPPPTPKYPPPAPKYPPPPPEFENERLRKAYFVIQRLRKKITGGRMDVVKTWKGKDVCRYKGFRCDPLPVEKERAVSAVMFNGFKFQGPELCLEGFMDELDDIAVFHANSNFFLGPIPKKINRQRFFYELDLSNNKLPGASLLTFLDLRFNNYCGPIPKQLFNLDIISAIYINNNQFSSSLPSNLGRTPARFLTFANNQFTGQIPRSIGDAKKTMEEIVFFNNKLDGYLPCEIGNLENAVLFDAGKNRLTGPIPLSFACLAKAELLYLADNQLYGPVPEEICKLPKLGNFTLRNNFFTKVGPACKKLIKKKILDVSNNCIPGLPNQRCEEDCKEFACRPKDHGDDKSFTYIPCKNNYYLHSHVSKPSDNVNYVSPKRTYAALAPDPQ 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2476975 2479388 + Cp4.1LG01g02450.1 Cpe01g00429 461742

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00429 457 Gene3D Ribonuclease Inhibitor 149 397 IPR032675 -
Cpe01g00429 457 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 9 453 - -
Cpe01g00429 457 PANTHER BNAC05G26270D PROTEIN 9 453 - -
Cpe01g00429 457 MobiDBLite consensus disorder prediction 36 90 - -
Cpe01g00429 457 MobiDBLite consensus disorder prediction 46 90 - -
Cpe01g00429 457 SUPERFAMILY L domain-like 128 390 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00429 - - - cmax:111480747 679.863
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g00429 Cpe15g00478 CCT
Cpe01g00429 Cpe15g00533 CCT
Cpe01g00429 Cpe14g00287 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00429 Cpe-Chr1:2476975 Cpe15g00478 Cpe-Chr15:5769119 4.78E-111 dispersed
Cpe01g00429 Cpe-Chr1:2476975 Cpe11g00139 Cpe-Chr11:748770 3.65E-101 wgd
Cpe01g00429 Cpe-Chr1:2476975 Cpe14g00287 Cpe-Chr14:1681202 1.09E-83 wgd
Cpe01g00429 Cpe-Chr1:2476975 Cpe15g00477 Cpe-Chr15:5767108 3.72E-130 wgd
Cpe01g00429 Cpe-Chr1:2476975 Cpe02g00193 Cpe-Chr2:1005771 6.72E-93 wgd
Cpe01g00429 Cpe-Chr1:2476975 Cpe04g00293 Cpe-Chr4:3655511 3.85E-133 wgd
Cpe01g00429 Cpe-Chr1:2476975 Cpe07g00496 Cpe-Chr7:3241893 7.08E-86 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g379 . . . . . Bpe12g00048 . . Cmo19g00609 . . . . . . . Cpe15g00478 . . . . . . . Cla02g00622 Cam02g0651 Cec02g0652 Cco02g0680 Clacu02g0659 Cmu02g0654 Cre02g0973 Cone12ag1078 Cone8ag1116 Cone3ag0989 Cone10ag1007 . Csa07g00737 . Cme01g00071 Blo04g00475 . . . . . . Bma08g00811 . . . Cma11g01736 Cma19g00589 . . Cpe14g00287 Cpe01g00429 . . . . . . . . . . . . . . . . Chy01g00077 .
Vvi3g580 . . . . . Bpe12g00077 . . Cmo19g00673 . . . . . . . Cpe15g00533 Bhi05g01223 Tan02g0809 . . Hepe02g0515 . . Cla02g00529 Cam02g0547 Cec02g0548 Cco02g0554 Clacu02g0548 Cmu02g0543 Cre02g0874 Cone12ag1146 Cone8ag1194 Cone3ag1157 Cone10ag1166 Lsi10g00673 . . Cme01g01430 Blo04g00507 Blo13g00556 Bda15g00017 Bda14g00548 . . . . . . . . Cma19g00659 . Car19g00502 . Cpe01g00429 . . . . . . . . . . . . . . Lsi11g01095 . Chy01g00795 Cme11g00207
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000853 1 2 2 1 2 3 4 3 3 3 3 3 5 3 3 5 3 6 4 3 3 2 1 4 4 4 2 4 3 1 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00429 Cpe_Chr01 FPKM 6.400406 8.366864 9.187148 8.581345 14.360826 13.888199 14.247551 5.614419 5.055912 5.269547