Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00431 ATGGCGGCTCAGGTGCAAGCTCAGCCTCAAAATTCCATTTCCGGCATCAATCCGGCGGGAAATGGTGGTGCAAATTTTGTGACTACTTCTTTGTATGTCGGAGATCTGGACCCGAATGTCACGGATTCACAGCTCTATGATATATTTAATCAGTTGGGTCAGGTGGTTTCGGTTCGGGTTTGCCGAGACTTGACGACCCGGCGATCTCTCGGCTATGGTTATGTCAACTACAGCAACCCACAAGATGCTGCAAGAGCATTGGATGTGCTGAACTTTTCCCCACTAAATGGAAAACCTATTAGAGTTATGTATTCTCACCGTGACCCAAGCATTCGCAAAAGTGGGGCTGGAAATATATTTATCAAGAATTTAGACAAAGCAATTGACCATAAAGCTCTACATGATACATTTTCGGCATTTGGTAGTATCCTGTCTTGCAAAGTGGCTTTAGATTCCTCTGGCCAGTCAAAAGGCTATGGTTTTGTGCAATTTGACAATGAGGATTCTGCTCTGAAAGCTATTGAGAAGTTGAACGGTATGCTGTTGAATGATAAGCAAGTTTATGTAGGACCCTTTCTTCGTAAACAAGAAAGAGATAGTTCTGTTGGCAAATCCAAATTTAACAATGTGTTTGTGAAGAATCTTTCTGAGACAACTACGGAAGAAGATTTGAACAAGGTTTTTTCTGAATTTGGGACAATCACCAGTATCGTTGTGATGAGGGATGCTGATGGCAAATCAAAATGCTTTGGATTTGTGAATTTTGAAAATGCTGACGATGCTGCTAGGGCAGTTGATGCCCTCAATGGAAATGTATTTGATGATAAGGAGTGGTATGTTGGGAGAGCACAGAAAAAATCTGAAAGAGAAGTAGAATTAAAGAACCGGTTTGAACAAACCATGAAAGAGGCAGCTGACAAGTACCAGGGGGCAAACTTGTACATTAAAAATTTAGATGATAGCATTAGTGATGATAAGCTTAAGGAGGTTTTTGCTCCGTTTGGCACTATCACCTCGTGCAAGGTCATGCGTGACCCCAATGGTGTGAGCAGAGGTTCTGGATTTGTTGCATTTTCAACCCCTGAAGAGGCATCTAGAGCTCTTATGGAGATGAATGGCAAAATAATTGTTAGCAAACCATTGTATGTAGCACTTGCACAGAGGAAAGAAGATAGAAGGGCCAGATTGCAGGCTCAGTTCTCTCAAATACGACCCGTTCCCATGGCTGCTTCAGTTGCCCCTCGGATGCCAATCTATCCCCCTGGTGGTCCAGGTATCGGACAGCAAATGTTTTATGGTCAAGGTCCTCCTACAATGATTCCTTCCCAAGGTGGCTTTGGTTATCAGCAGCAGCTTGTTCCTGGTATAAGGCCCGGTGGAGGTCCAATGCCAAATTTCTTTGTCCCAATGGTTCAACAGGGTCAGCAAGGGCCGCGTCCTGGTGGCAGACGTGCAGGAGCTGTCCAGCAAACCCAGCAGCCTGTTCCAATGATGCAACAACAGATGTTGCCTAGAGGAGGACGTGTCTATCGTTATCCCCCAGGAAGAGGTCTGCCTGATGTTCCTATGCCTGGTGTTGCTGGAGGCATGTTTTCTGTTCCATATGACATGGGTGGTATGCCGTTGCGTGATGCATCCCTCTCCTCTCAACCTGTCCCTGTAGGTGCTCTGGCATCTGCTTTGGCAAATGCTACTCCAGACCAACAGAGAACAATGCTGGGGGAGAATCTTTACCCGCTTGTGGAACAATTGGAGCCAGACAACGCAGCCAAGGTAACTGGAATGCTTCTTGAGATGGACCAGACTGAGGTCTTGCATTTACTCGAGTCCCCGGAGGCTTTGAAGGCGAAAGTAGCTGAGGCTATGGAGGTTTTGAGGAATGTAGCTGCTGCAACACAGCAGCAGCAAGCAGGCAATGCAGCAGCTGATCAGCTAGCCTCTCTGTCGCTGACCGAGAACCTCGTGTCGTGA 1971 46.32 MAAQVQAQPQNSISGINPAGNGGANFVTTSLYVGDLDPNVTDSQLYDIFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFSPLNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEDSALKAIEKLNGMLLNDKQVYVGPFLRKQERDSSVGKSKFNNVFVKNLSETTTEEDLNKVFSEFGTITSIVVMRDADGKSKCFGFVNFENADDAARAVDALNGNVFDDKEWYVGRAQKKSEREVELKNRFEQTMKEAADKYQGANLYIKNLDDSISDDKLKEVFAPFGTITSCKVMRDPNGVSRGSGFVAFSTPEEASRALMEMNGKIIVSKPLYVALAQRKEDRRARLQAQFSQIRPVPMAASVAPRMPIYPPGGPGIGQQMFYGQGPPTMIPSQGGFGYQQQLVPGIRPGGGPMPNFFVPMVQQGQQGPRPGGRRAGAVQQTQQPVPMMQQQMLPRGGRVYRYPPGRGLPDVPMPGVAGGMFSVPYDMGGMPLRDASLSSQPVPVGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAAATQQQQAGNAAADQLASLSLTENLVS 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2489190 2494261 + Cp4.1LG01g02470.1 Cpe01g00431 461744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00431 656 CDD RRM1_I_PABPs 30 109 - -
Cpe01g00431 656 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 278 IPR000504 GO:0003723
Cpe01g00431 656 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 101 IPR000504 GO:0003723
Cpe01g00431 656 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 187 IPR000504 GO:0003723
Cpe01g00431 656 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 381 IPR000504 GO:0003723
Cpe01g00431 656 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 388 IPR000504 GO:0003723
Cpe01g00431 656 SUPERFAMILY PABC (PABP) domain 495 640 IPR036053 GO:0003723
Cpe01g00431 656 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 553 630 IPR002004 GO:0003723
Cpe01g00431 656 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 30 626 IPR006515 GO:0003723
Cpe01g00431 656 MobiDBLite consensus disorder prediction 474 493 - -
Cpe01g00431 656 PANTHER RNA BINDING PROTEIN 18 635 - -
Cpe01g00431 656 SMART rrm2_1 30 103 IPR003954 GO:0003676
Cpe01g00431 656 SMART rrm2_1 209 281 IPR003954 GO:0003676
Cpe01g00431 656 SMART rrm2_1 118 190 IPR003954 GO:0003676
Cpe01g00431 656 SMART rrm2_1 312 384 IPR003954 GO:0003676
Cpe01g00431 656 SUPERFAMILY RNA-binding domain, RBD 208 391 IPR035979 GO:0003676
Cpe01g00431 656 SMART rrm1_1 209 281 IPR000504 GO:0003723
Cpe01g00431 656 SMART rrm1_1 118 190 IPR000504 GO:0003723
Cpe01g00431 656 SMART rrm1_1 312 384 IPR000504 GO:0003723
Cpe01g00431 656 SMART rrm1_1 30 103 IPR000504 GO:0003723
Cpe01g00431 656 Gene3D - 1 116 IPR012677 -
Cpe01g00431 656 Gene3D - 194 291 IPR012677 -
Cpe01g00431 656 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 189 IPR000504 GO:0003723
Cpe01g00431 656 SMART poly_2 565 628 IPR002004 GO:0003723
Cpe01g00431 656 Gene3D - 292 397 IPR012677 -
Cpe01g00431 656 Gene3D - 549 630 - -
Cpe01g00431 656 PANTHER POLYADENYLATE-BINDING PROTEIN 18 635 - -
Cpe01g00431 656 SUPERFAMILY RNA-binding domain, RBD 29 198 IPR035979 GO:0003676
Cpe01g00431 656 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Cpe01g00431 656 CDD RRM4_I_PABPs 310 388 - -
Cpe01g00431 656 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
Cpe01g00431 656 CDD RRM2_I_PABPs 115 191 IPR045305 -
Cpe01g00431 656 Pfam Poly-adenylate binding protein, unique domain 561 625 IPR002004 GO:0003723
Cpe01g00431 656 Gene3D - 117 190 IPR012677 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g00431 Cpe04g00290 CCT
Cpe01g00431 Cpe15g00480 CCT
Cpe01g00431 Cpe15g00480 ECH
Cpe01g00431 Cpe04g00290 ECH
Cpe01g00431 Cpe14g00289 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00431 Cpe-Chr1:2489190 Cpe13g00706 Cpe-Chr13:6557787 0 dispersed
Cpe05g00641 Cpe-Chr5:3923460 Cpe01g00431 Cpe-Chr1:2489190 9.83E-07 transposed
Cpe01g00431 Cpe-Chr1:2489190 Cpe14g00289 Cpe-Chr14:1694337 0 wgd
Cpe01g00431 Cpe-Chr1:2489190 Cpe15g00480 Cpe-Chr15:5807407 0 wgd
Cpe01g00431 Cpe-Chr1:2489190 Cpe04g00290 Cpe-Chr4:3623251 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00431 K13126 - csv:101219802 1156.74