Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00435 ATGCCTGGAAGTGTTGTTGTTGAGCCCTTGGATTTGAGCGTGCAGATTCCTTACCATTTCAGGTGCCCGATTTCTCTCGAGCTCATGCGCGATCCGGTTACGGTTAGCACTGGCCAGACCTACGACCGTTCTAGTATTGAGTCATGGGTGGCTACCGGCAACACTACGTGTCCGGTCACTAGGGCTCCGCTTACGGAGTTTACGCTCATCCCGAACCATACGTTGCGACGCCTCATCCAGGAGTGGTGTGTTGCGAATCGGTCTTATGGTGTTGAGAGGATTCCGACACCGAAGCAACCGGCGGATCCGTCTTTGGTTCGGTCTCTGCTTGGCCAAGCTTCGTCGAAATCGAGTGGTTCGAGTTCGAGAATCTCGGCTGTGCGGCGGTTGAAAGGACTTGCTCGTGACTCGGAGAAGAATCGGTTGTTGATTTCTTCTCTGAATGCTCGTGAAATTCTTATTGATGTTGTGTTTTCGAATTCGGATTCGGATTCGGTTTCTCCTGATTTGAGCCGCGAATCGCTCGCGTTGCTTGTGATGTTGCCGCTCACGGAATCTGAGTGCGTTCTCGTTGCGTCTGATCCGCAACGGATTGGTTACCTGTCACATCTTCTTTTTGATTCTTCGATTGAAGTCCGAATCAATGCCGCTGCGTTGATTGAAATCGTGATTGCAGGAACTCGAGCGTCCGAGCTTCGAGGACAAATTTGCGCTATCGACGAATTATTCGAAGGCGTGGTCGAAATTCTCAGAGATCCAACGGCGTATCCGCGAGCGGTAAAGGTCGGAGTTAAGGCCTTATTCGCTCTCTGTTTAGTGAAACAAACCAGGCACAAGGCGGTTTCCGCCGGCGCCGCCGAGATTCTCATCGACCGATTCCCCGATTTGGAGAAGTACGACGCAGAGAGAGCCCTAGCAACGATCGAACTCATTTGCAGAATTCCAACTGGTTACGACGCGTTTGCCGCTCACGCGCTCACAGTTCCGCTTTTGGTGAAAGTCATTCTGAAGATCTCAGACAGAGCGACGGAATCAGCAGTCGGAGCTCTGGTATCGCTGTGCTCGGCGTCGGAGGAGAACCGACGGGAGGCGGTGGCGGCAGGGATTTTTACACAGTTGTTGCTGTTGGTGCAAAGCGATTGTACGGATCGAGTTAAACGGAAATCCCAAGTTCTGCTGAAGCTTCTTCGAGATTCATGGCCGCAGGATTCCGTCGGAAACTCGGACGACTATGGTTGCAGTGAAATTGTGATACCGTTTTATTAA 1266 51.82 MPGSVVVEPLDLSVQIPYHFRCPISLELMRDPVTVSTGQTYDRSSIESWVATGNTTCPVTRAPLTEFTLIPNHTLRRLIQEWCVANRSYGVERIPTPKQPADPSLVRSLLGQASSKSSGSSSRISAVRRLKGLARDSEKNRLLISSLNAREILIDVVFSNSDSDSVSPDLSRESLALLVMLPLTESECVLVASDPQRIGYLSHLLFDSSIEVRINAAALIEIVIAGTRASELRGQICAIDELFEGVVEILRDPTAYPRAVKVGVKALFALCLVKQTRHKAVSAGAAEILIDRFPDLEKYDAERALATIELICRIPTGYDAFAAHALTVPLLVKVILKISDRATESAVGALVSLCSASEENRREAVAAGIFTQLLLLVQSDCTDRVKRKSQVLLKLLRDSWPQDSVGNSDDYGCSEIVIPFY 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2508832 2510097 - Cp4.1LG01g02230.1 Cpe01g00435 461748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00435 421 SUPERFAMILY ARM repeat 106 396 IPR016024 -
Cpe01g00435 421 CDD RING-Ubox_PUB 20 61 IPR045210 -
Cpe01g00435 421 Pfam U-box domain 16 87 IPR003613 GO:0004842|GO:0016567
Cpe01g00435 421 Gene3D - 93 407 IPR011989 -
Cpe01g00435 421 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 417 - -
Cpe01g00435 421 PANTHER WDSAM1 PROTEIN 7 417 IPR045185 GO:0061630
Cpe01g00435 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 92 IPR013083 -
Cpe01g00435 421 ProSiteProfiles U-box domain profile. 15 89 IPR003613 GO:0004842|GO:0016567
Cpe01g00435 421 SMART Ubox_2 19 82 IPR003613 GO:0004842|GO:0016567
Cpe01g00435 421 SUPERFAMILY RING/U-box 13 91 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00435 Cpe-Chr1:2508832 Cpe02g01449 Cpe-Chr2:12494606 2.71E-69 dispersed
Cpe06g00498 Cpe-Chr6:2960517 Cpe01g00435 Cpe-Chr1:2508832 1.71E-21 dispersed
Cpe07g00525 Cpe-Chr7:3466551 Cpe01g00435 Cpe-Chr1:2508832 7.82E-39 dispersed
Cpe11g00111 Cpe-Chr11:627309 Cpe01g00435 Cpe-Chr1:2508832 8.68E-38 dispersed
Cpe16g00088 Cpe-Chr16:1650866 Cpe01g00435 Cpe-Chr1:2508832 8.16E-50 dispersed
Cpe01g00435 Cpe-Chr1:2508832 Cpe01g00066 Cpe-Chr1:401252 8.48E-67 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00435 - - csv:101219319 742.651