Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00437 ATGGCTCCTCCTGGTTTCTCCCGGAGATTACTTCTGGCGGCGACTCTGTTTCCCATTATCTTCCTCTTCCACTCTTCTTCAGCTCGCAAGGAGGGTGGGACGTGTCTTTTTAATGGTAACTGCGACGCCGGCTTGCATTGCCAGACTTGCATTGCCAACGGCAATATCCGGCCGCGTTGCACTCGAATCCAGCCGATCAGTCCAATTTCAAAGGTGAATGATCTTCCATTTAATAAATACACATGGTTGACGACCCACAATTCATTCGCCATATTAGGGGCGAAGTCTGAAACTGGGACTCCGATTCTTGCTCCTACCAATCAACAGGGCTCCATTACTAGCCAGCTCAATAATGGAGTCAGAGGATTTATGCTTGACACGTATGACTTTCGAAACGATATATGGTTATGTCACTCATTCGAAGGCCAATGCCACGACTTTACAGCTTTCCAACCAGCCATTGAGGTTCTGAAAGAGTTCCAAGCATTTCTTGGAGCAAACCCTTCTGAAATCGTCACCATTATCATCGAAGACTATGTCACGGCACCAAACGGACTAACTAATGTGTTTGCTGCTGCTGGTCTGAAACAATTCTGGTTCCCAGTATCAAGTATGCCTAAGAATGGTGGAGATTGGCCCACTGTTAGTGACATGATCCAGAAAAACCAACGCTTGCTTGTTTTTACTTCCAAAGCAGCAAAAGAAGCCTCTGACGGAATTGCATACGTATGGAATTACATGGTAGAGAACCAATATGGCGATGAAGGAATGAAAGCAGGTTCGTGCCCAAACCGAGGAGAATCAACACCGATGAACACAATTTCAAGGTCACTCGTAATCGTAAATTTCTTCAGAAGTGCTTCAAATTTCCCTGCAGCTTGCAGGGACAACTCAGCACCATTACTCAACATGGTGAACACTTGCTATAATGCAGCAGGAAAAAGATGGCCTAACTTCATTGCTGTTGACTTCTACAAGAGAAGTGACGGGGGAGGAGCTCCAGAAGCCGTTGATGTATCGAACGGTCAGTCTATTTGTGGATGTCCAACCATTTCCAATTGCAAGGATTTCGGCAATTCA 1080 45.74 MAPPGFSRRLLLAATLFPIIFLFHSSSARKEGGTCLFNGNCDAGLHCQTCIANGNIRPRCTRIQPISPISKVNDLPFNKYTWLTTHNSFAILGAKSETGTPILAPTNQQGSITSQLNNGVRGFMLDTYDFRNDIWLCHSFEGQCHDFTAFQPAIEVLKEFQAFLGANPSEIVTIIIEDYVTAPNGLTNVFAAAGLKQFWFPVSSMPKNGGDWPTVSDMIQKNQRLLVFTSKAAKEASDGIAYVWNYMVENQYGDEGMKAGSCPNRGESTPMNTISRSLVIVNFFRSASNFPAACRDNSAPLLNMVNTCYNAAGKRWPNFIAVDFYKRSDGGGAPEAVDVSNGQSICGCPTISNCKDFGNS 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2517150 2519801 - Cp4.1LG01g02200.1 Cpe01g00437 461750

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00437 360 SUPERFAMILY PLC-like phosphodiesterases 73 342 IPR017946 GO:0006629|GO:0008081
Cpe01g00437 360 Gene3D Phosphatidylinositol (PI) phosphodiesterase 66 332 IPR017946 GO:0006629|GO:0008081
Cpe01g00437 360 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 76 181 - -
Cpe01g00437 360 PANTHER PLC-LIKE PHOSPHODIESTERASES SUPERFAMILY PROTEIN 14 357 - -
Cpe01g00437 360 PANTHER UNCHARACTERIZED 14 357 - -
Cpe01g00437 360 CDD PI-PLCc_At5g67130_like 67 341 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00437 - - - csv:101203073 600.127
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g00437 Cpe14g00291 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00437 Cpe-Chr1:2517150 Cpe19g00627 Cpe-Chr19:5106541 1.24E-167 dispersed
Cpe01g02434 Cpe-Chr1:20197144 Cpe01g00437 Cpe-Chr1:2517150 1.72E-108 transposed
Cpe01g00437 Cpe-Chr1:2517150 Cpe14g00291 Cpe-Chr14:1701702 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g394 . Blo15g00750 Bda06g01073 . Bpe07g00375 . . Bma12g00441 . . Cma02g00450 . Car02g00306 . . . . . . . . . . . . . . . . . . Cone12ag1084 . Cone3ag1181 Cone10ag0992 Lsi10g00528 . . . . . . . . . . . . Cmo02g00459 . . . . . Cpe14g00291 Cpe01g00437 . . . . . . . . . . . . . . . . . Cme11g00541
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002524 2 2 2 1 2 1 3 1 1 1 1 2 2 2 2 4 2 5 3 2 2 2 2 2 1 1 1 3 1 3 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00437 Cpe_Chr01 FPKM 17.464912 21.649448 13.491668 20.098595 1.792448 1.761597 2.165721 1.609671 0.884744 1.079558