Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00439 ATGGCGGCCATGTTCGTTAATCGAAGAGGATCCAGATCATGGGCCACACCGGAGGAGTTGCCGGTGTCCAGTGGGGTTCCGATACCACCCAACAAAAAAATGGTCAAATGCGATGCTTCTGTTCATTGCTCTCGTGACATTATCTTTCTGTGTCGGCTTGATGTTTCAAAAAATGTAGCCATGGTTGATTCATGGCCCGATTTGTTCTTCCGCTCGCCGCCTTCCCGTGCACTGATCGGTGGAGTTGATGATTCGAATTCCCGGTTGGAGAAAGAAGCCGCCGTGACGTATTCTAGGGATTTCCGGAAGGAGCCTATATTGGTTTCTGGTTCTGATGAGGGGAGGAAATCTTGTGCTATAGGATGTGAATTTAAGGTGAATCCAAGTAGATATTCCGATGCTGCGTTTGGTTTAGATCACCAGGGTGGAATGCCTTCAATTCTTCAATCCATGGAATCAACTCTATATTTTGCAGAGAACAATATTGTCCAGGCACCACGGAATGGTTATAGTATAGTAATGACCACCAGTCTCTTATCAGATGTACCTTTTGGATACTTCTCCTGGGCCGAGTACGATATCATGGCTCCAGTGCAGGCAAAGAATGAGAGTGCCCTTGCAGCTGCTTTCACTTTTGCAGTTGGGTTGACACAGAGGCAAGCTTTATATACCTTAAGATTTCAAGGGGATTCTGATCTCAGAAAACATGTGGAAGATAACCCATGTGCCAAATTTGAAGCCATTTTCATATAG 753 45.55 MAAMFVNRRGSRSWATPEELPVSSGVPIPPNKKMVKCDASVHCSRDIIFLCRLDVSKNVAMVDSWPDLFFRSPPSRALIGGVDDSNSRLEKEAAVTYSRDFRKEPILVSGSDEGRKSCAIGCEFKVNPSRYSDAAFGLDHQGGMPSILQSMESTLYFAENNIVQAPRNGYSIVMTTSLLSDVPFGYFSWAEYDIMAPVQAKNESALAAAFTFAVGLTQRQALYTLRFQGDSDLRKHVEDNPCAKFEAIFI 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2526392 2530972 - Cp4.1LG01g02170.1 Cpe01g00439 461752

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00439 250 PANTHER GLYCOPROTEIN 3-ALPHA-L-FUCOSYLTRANSFERASE A-LIKE ISOFORM X1 41 215 - -
Cpe01g00439 250 PANTHER ALPHA- 1,3 -FUCOSYLTRANSFERASE 41 215 IPR001503 GO:0006486|GO:0008417|GO:0016020
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00439 K00753 E2.4.1.214; glycoprotein 3-alpha-L-fucosyltransferase [EC:2.4.1.214] - csv:101202837 280.411
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g00439 Cpe15g00486 CCT
Cpe01g00439 Cpe14g00294 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00294 Cpe-Chr14:1726751 Cpe01g00439 Cpe-Chr1:2526392 3.19E-70 transposed
Cpe01g00439 Cpe-Chr1:2526392 Cpe14g00293 Cpe-Chr14:1719598 1.12E-16 wgd
Cpe01g00439 Cpe-Chr1:2526392 Cpe15g00486 Cpe-Chr15:5844027 1.36E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g408 Blo02g00831 Blo15g00748 Bda06g01072 Bda08g00885 . . Bma05g00514 . Cmo19g00620 . . . . . . . Cpe15g00486 Bhi05g01063 . . . . . . Cla02g00602 Cam02g0631 Cec02g0631 Cco02g0650 Clacu02g0635 Cmu02g0631 Cre02g0955 . . Cone3ag1179 Cone10ag0987 . Csa07g00757 . Cme01g00052 . . . . . . . . . . . . Cma19g00602 . Car19g00455 Cpe14g00294 Cpe01g00439 . . . . . . . . . . . . . . . . Chy01g00056 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016408 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 1 0 0 2 0 0 0 0 1 0 0 0 0 0 0 7
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00439 Cpe_Chr01 FPKM 2.745646 3.188691 2.085933 2.538974 2.30677 2.679382 2.559738 3.874784 3.868888 4.507446