Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00441 ATGTTCGCCGTAAACCCCACTTCCCTTTTCTTCCCTTCCAATCCCACCGCTACACGTCAACAATCCATCTCTCTCTCCCCTTCCCTCCGCCGCAGCTGTGCCGCTGCCGGCGACGCCTCGGTCGGTCCTTCATTTTCTCGGCTGTTCAATTTCCCGTCTGTTTCTGCCACCGACGCAACCGGCGGCTTTCGACTCGGACAAGAGTACGACGGCGGAGCTTCCTCCGGCTCTGTTGATGGAGTGGGGAGGTCGGGTAGCGGAAATGGTAGCGTCAAAGCAAACGCCATGGAGAAAAAATGGTCGCGGGATAGAGAGAGTTACTTGGTCGATAGTAGCGAGGTTCTTCCTCTTCCTATGACTTATCCGGATTCTTCCCCTGTCACGCCTGAGGAGATTGACCGACGGCTTCAGTGCGATCCCCAAGTGGAGGATTGTAAAGAAGTGGTGTATGAATGGACCGGGAAGTGCCGCAGTTGCCAGGGGTCTGGATTTGTTAGCTATTATAACAAAAAGGGAAGAGAGATCACTTGCAAATGTATTCCTTGCCTTGGAGTTGGGTATGTGCAGAAGATAACAGCTCGAAAGGACATTGAACTAATGGAGGATTTGGATAATGGAAAACCATTGTGA 630 52.06 MFAVNPTSLFFPSNPTATRQQSISLSPSLRRSCAAAGDASVGPSFSRLFNFPSVSATDATGGFRLGQEYDGGASSGSVDGVGRSGSGNGSVKANAMEKKWSRDRESYLVDSSEVLPLPMTYPDSSPVTPEEIDRRLQCDPQVEDCKEVVYEWTGKCRSCQGSGFVSYYNKKGREITCKCIPCLGVGYVQKITARKDIELMEDLDNGKPL 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2542115 2546004 + Cp4.1LG01g02250.1 Cpe01g00441 461754

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00441 209 PANTHER PROTEIN DISULFIDE-ISOMERASE SCO2 1 207 IPR037477 -
Cpe01g00441 209 MobiDBLite consensus disorder prediction 73 96 - -
Cpe01g00441 209 PANTHER PROTEIN DISULFIDE-ISOMERASE SCO2 1 207 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00441 K22521 SCO2; protein disulfide-isomerase [EC:5.3.4.1] - csv:101218454 339.347
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g422 . Blo15g00740 Bda06g01063 . Bpe07g00387 . . Bma12g00458 . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1097 . . . . . . . . . . . . . . . . . . . . . . . Cpe01g00441 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008475 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 4 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00441 Cpe_Chr01 FPKM 30.778351 29.284523 25.60605 27.621195 52.722733 49.513905 59.216129 25.497635 26.074844 27.296152