Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00442 ATGGAAGACGAAGATGAGATTGTCCCAGCCTCTGATATTAGCGATTCAGGCGACGACTACACCGACATTAATGATGAAGGGTCTGAAGACGGGAACGAGGACGGCGAAGAGGAAGAGGAGCAATCTTCCAGCCTTTCTCCTTCATCCGATGAGGATCTAAAATCGAAAAACGTCGATGCTCTCTTGAGAGGTAACCTGGTCGTGAGAAGACAATCGCTACTCCCAAGAGTTCTCTCAGTGGCAGAAGGCGCAGCAGTCTGTAGAAAACCTTTTAAGCCTCCATGCTCAAGTGGATATGATGAAAGAAACAACCAGCTTGCACATCGACTGTGGGCACGAAAACGATTTGTCCCTTGGGGCTCGTCAAGACCAGTGTCACCTGTAATTTCTTATAACTTATTTGTCCCAAAAATTGCTGAGAAAGATGTAGTGGAGGAGAATGTGACTCTACCACCTGGGATCGATCCTTTGGTCTTGTGGCAACCTGAAGACTCTGAGCTCGATGTCACTAATTTAACATCAATCATAGTAGATCCAGTGCTAGTTCGTTTCCTCCGCCCTCATCAGAGAGAAGGTGTGCAGTTCATGTTTGAATGTGTTTCAGGGCTACATAAGGGGACAGACATATTTGGGTGCATTCTGGCAGATGATATGGGTTTGGGAAAGACATTGCAGTCGATCACCTTACTTTATACCCTTCTTTGTCAAGGGTTCGATGGAAAGCCAATGGTTAAAAAGGCTATCATTGTTACACCTACCAGTCTTGTGAGTAATTGGGAGGCTGAAATTAAGAAGTGGGTTGGAGAAAGGGTTCACCTTATTGCTCTCTGTGAAAGTTCCAGAGAGGATGTTGTCACTAGCATCGACAACTTTGTACATCCCAAGAGTACTTCACAGGTGCTGATTATTTCATATGAGAAATTTCGTATGCATTCATCGAAGTTCAGCCAAAGTGAATCATGTGATTTAATCATATGTGATGAAGCTCACCGATTGAAGAATGATCAAACATTGACAAATCGGGCACTGGCTTCTTTGTTGTGCAGGCGTAGGATTTTGTTATCAGGAACTCCAATGCAGAATGATCTAGAAGAGTTCTTTGCCATGGTTAACTTTACCAACCCAGGAATTTTGGGTGATGTTACATATTTCCGTCGATATTATGAGCTTGCACATCGACTGTGGGCACGAAAACGATTTGTCCCTTGGGGCTCGTCAAGACCAGTGTCACCTGTAATTTCTTATAACTTATTTGTCCCAAAAATTGCTGAGAAAGATGTAGTGGAGGAGAATGTGACTCTACCACCTGGGATCGATCCTTTGGTCTTGTGGCAACCTGAAGACTCTGAGCTCGATGTCACTAATTTAACATCAATCATAGTAGATCCAGTGCTAGTTCGTTTCCTCCGCCCTCATCAGAGAGAAGGTGTGCAGTTCATGTTTGAATGTGTTTCAGGGCTACATAAGGGGACAGACATATTTGGGTGCATTCTGGCAGATGATATGGGTTTGGGAAAGACATTGCAGTCGATCACCTTACTTTATACCCTTCTTTGTCAAGGGTTCGATGGAAAGCCAATGGTTAAAAAGGCTATCATTGTTACACCTACCAGTCTTGTGAGTAATTGGGAGGCTGAAATTAAGAAGTGGGTTGGAGAAAGGGTTCACCTTATTGCTCTCTGTGAAAGTTCCAGAGAGGATGTTGTCACTAGCATCGACAACTTTGTACATCCCAAGAGTACTTCACAGGTGCTGATTATTTCATATGAGAAATTTCGTATGCATTCATCGAAGTTCAGCCAAAGTGAATCATGTGATTTAATCATATGTGATGAAGCTCACCGATTGAAGAATGATCAAACATTGACAAATCGGGCACTGGCTTCTTTGTTGTGCAGGCGTAGGATTTTGTTATCAGGAACTCCAATGCAGGCACCAATTATTTGTGGAAGAGAACCTACCGCTACAGAGGAAGAGAAAATGCTGGGTGCTCAACGCTCTACCGAACTAAGTGAAAAAGTTAATCAGTTTATACTACGGAGGACCAATGCACTTTTATCAAATCACTTGCCACCAAAGGTACGCCATAATATTATCTATAACCAAGGTGAATCTTGTTTGGGAAAGACATTGCAGTCGATCACCTTACTTTATACCCTTCTTTGTCAAGGGTTCGATGGAAAGCCAATGGTTAAAAAGGCTATCATTGTTACACCTACCAGTCTTGTGAGTAATTGGGAGGCTGAAATTAAGAAGTGGGTTGGAGAAAGGGTTCACCTTATTGCTCTCTGTGAAAGTTCCAGAGAGGATGTTGTCACTAGCATCGACAACTTTGTACATCCCAAGAGTACTTCACAGGTGCTGATTATTTCATATGAGAAATTTCGTATGCATTCATCGAAGTTCAGCCAAAGTGAATCATGTGATTTAATCATATGTGATGAAGCTCACCGATTGAAGAATGATCAAACATTGACAAATCGGGCACTGGCTTCTTTGTTGTGCAGGCGTAGGATTTTGTTATCAGGAACTCCAATGCAGGCACCAATTATTTGTGGAAGAGAACCTACCGCTACAGAGGAAGAGAAAATGCTGGGTGCTCAACGCTCTACCGAACTAAGTGAAAAAGTTAATCAGTTTATACTACGGAGGACCAATGCACTTTTATCAAATCACTTGCCACCAAAGATTGTTGAAGTCATTTGCTGCAAGTTGACTCCTCTCCAAGCAGACCTATATAACCATTTTGTACAGTCAAAAAATGTTAAGCGAGCAATTACCGAAGAACTAAAGCAATCTAAGATTTTGGCCTATATAACTGCACTTAAGAAACTTTGTAATCATCCAAAGCTTATATACGATACTATAAAAAGTGGGAGTCCCGGAACTTCGGGATTAGAGAGTTGTATTCGTTTTTTCCCTCCAGAGATGTTCTCTGGAAGATCGGGTGCATGGACTGGTGGAGATGGGTCTTGGGTTGAGTTGTCAGGGAAAATGCACGTTCTAGCTAGGTTACTAGCCCATTTACGCCAGAGAACTGATGACCGCATTGTCCTTGTCTCAAACTACACTCAAACGCTGGATTTGTTTGCTCAACTATGTCGTGAAAGGAAATACCCATATTTAAGGCTTGATGGAAGCACATCAATCAGTAAAAGACAGAAGTTAGTCAACCGTTTTAATGACCTGTCAAAGGATGAGTTTGTTTTTCTTTTGAGCAGTAAGGCTGGTGGATGTGGTCTAAATTTGATTGGTGGAAATCGGTTAGTTTTGTTTGACCCCGACTGGAACCCTGCAAATGATAAGCAAGCTGCTGCAAGAGTCTGGAGGGATGGGCAAAAGAAGAGAGTATTCATCTACAGATTTTTAAGCACCGGAACAATTGAAGAAAAGGTGTATCAGAGGCAAATGTCAAAAGAAGGGTTGCAAAAAGTTATTCAGCAGGAGTTAACAGATAATCTTACCGCGCAGGCAAACTTCCTTTCGTCTGAAGATCTACGTGATCTATTCTCATTCCATGGTGACGTCAGGTCTGAAATCCATGAAAAAATGAATTGCACTCGGTGCCAAAATTGTAATGGTAGGCCCGAGGAGATGGACGAAGGCCCGTCCACGAGCAGAACTTGTCAGTCTGACCAAGTAACTTCTGACATTGGCGGATTTGCACAACTTGCTGGATGCTTGGACAAGCTGAAGAAATCAGAGCAACAGGTGGGGTCTCCTCTAGAAGAAGATTTAGCCAACTGGGGGCACCATTTTAACTCTACTACCGTGCCAGATACCATTTTGCAAGCTTCTGCTGGTGATGAGGTTACATTTGTTTTCTCGAATCAAATCGATGGGAAACTTGTTCCTGTCGAATCGAAAACTAGCCCAAGGATGAAGGAAGCAGAAGGAAATGAGAAGAACTCCAAATTGAACCAAAACTCAAAGCAGAAACTATTATTAGTATCTCAACATAGAAAACCTTTACAATCCATTACTTCAAATGAAGATCTTAACAAAGGTACATTAACTTTTACTTCCAATGTCTTTCAAAGGGAAACCATGAAGCCTGTCAGAACTTCACTTGAAGGTTCAATGCATGTAACATTGAATCTCAAGCATTCTCTTGGAAATTATTTACCACAGAAAAGAATGTCTGATGCTGTTGAATATGATGATTTCGAGTAA 4173 42.08 MEDEDEIVPASDISDSGDDYTDINDEGSEDGNEDGEEEEEQSSSLSPSSDEDLKSKNVDALLRGNLVVRRQSLLPRVLSVAEGAAVCRKPFKPPCSSGYDERNNQLAHRLWARKRFVPWGSSRPVSPVISYNLFVPKIAEKDVVEENVTLPPGIDPLVLWQPEDSELDVTNLTSIIVDPVLVRFLRPHQREGVQFMFECVSGLHKGTDIFGCILADDMGLGKTLQSITLLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGERVHLIALCESSREDVVTSIDNFVHPKSTSQVLIISYEKFRMHSSKFSQSESCDLIICDEAHRLKNDQTLTNRALASLLCRRRILLSGTPMQNDLEEFFAMVNFTNPGILGDVTYFRRYYELAHRLWARKRFVPWGSSRPVSPVISYNLFVPKIAEKDVVEENVTLPPGIDPLVLWQPEDSELDVTNLTSIIVDPVLVRFLRPHQREGVQFMFECVSGLHKGTDIFGCILADDMGLGKTLQSITLLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGERVHLIALCESSREDVVTSIDNFVHPKSTSQVLIISYEKFRMHSSKFSQSESCDLIICDEAHRLKNDQTLTNRALASLLCRRRILLSGTPMQAPIICGREPTATEEEKMLGAQRSTELSEKVNQFILRRTNALLSNHLPPKVRHNIIYNQGESCLGKTLQSITLLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGERVHLIALCESSREDVVTSIDNFVHPKSTSQVLIISYEKFRMHSSKFSQSESCDLIICDEAHRLKNDQTLTNRALASLLCRRRILLSGTPMQAPIICGREPTATEEEKMLGAQRSTELSEKVNQFILRRTNALLSNHLPPKIVEVICCKLTPLQADLYNHFVQSKNVKRAITEELKQSKILAYITALKKLCNHPKLIYDTIKSGSPGTSGLESCIRFFPPEMFSGRSGAWTGGDGSWVELSGKMHVLARLLAHLRQRTDDRIVLVSNYTQTLDLFAQLCRERKYPYLRLDGSTSISKRQKLVNRFNDLSKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQELTDNLTAQANFLSSEDLRDLFSFHGDVRSEIHEKMNCTRCQNCNGRPEEMDEGPSTSRTCQSDQVTSDIGGFAQLAGCLDKLKKSEQQVGSPLEEDLANWGHHFNSTTVPDTILQASAGDEVTFVFSNQIDGKLVPVESKTSPRMKEAEGNEKNSKLNQNSKQKLLLVSQHRKPLQSITSNEDLNKGTLTFTSNVFQRETMKPVRTSLEGSMHVTLNLKHSLGNYLPQKRMSDAVEYDDFE 1390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2546992 2557555 + Cp4.1LG01g02290.1 Cpe01g00442 461755

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00442 1390 PANTHER SNF2/RAD54 FAMILY MEMBER 401 697 - -
Cpe01g00442 1390 PANTHER SNF2/RAD54 FAMILY MEMBER 26 390 - -
Cpe01g00442 1390 Pfam Helicase conserved C-terminal domain 1003 1111 IPR001650 -
Cpe01g00442 1390 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 888 1275 IPR027417 -
Cpe01g00442 1390 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 401 697 - -
Cpe01g00442 1390 Gene3D - 884 1193 IPR027417 -
Cpe01g00442 1390 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 706 1311 - -
Cpe01g00442 1390 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 26 390 - -
Cpe01g00442 1390 Gene3D - 906 1175 - -
Cpe01g00442 1390 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 690 845 IPR014001 -
Cpe01g00442 1390 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 392 IPR027417 -
Cpe01g00442 1390 PANTHER SNF2/RAD54 FAMILY MEMBER 706 1311 - -
Cpe01g00442 1390 CDD SF2_C_SNF 995 1123 - -
Cpe01g00442 1390 SMART helicmild6 1028 1112 IPR001650 -
Cpe01g00442 1390 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 707 884 IPR027417 -
Cpe01g00442 1390 Pfam SNF2-related domain 188 389 IPR000330 GO:0005524|GO:0140658
Cpe01g00442 1390 Pfam SNF2-related domain 867 952 IPR000330 GO:0005524|GO:0140658
Cpe01g00442 1390 CDD DEXHc_RAD54 469 681 - -
Cpe01g00442 1390 CDD DEXHc_RAD54 185 389 - -
Cpe01g00442 1390 SMART ultradead3 181 384 IPR014001 -
Cpe01g00442 1390 SMART ultradead3 663 880 IPR014001 -
Cpe01g00442 1390 SMART ultradead3 465 659 IPR014001 -
Cpe01g00442 1390 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 211 376 IPR014001 -
Cpe01g00442 1390 MobiDBLite consensus disorder prediction 1 55 - -
Cpe01g00442 1390 MobiDBLite consensus disorder prediction 1 45 - -
Cpe01g00442 1390 Pfam SNF2-related domain 704 847 IPR000330 GO:0005524|GO:0140658
Cpe01g00442 1390 Pfam SNF2-related domain 472 645 IPR000330 GO:0005524|GO:0140658
Cpe01g00442 1390 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1001 1158 IPR001650 -
Cpe01g00442 1390 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 495 642 IPR014001 -
Cpe01g00442 1390 Gene3D - 160 398 IPR038718 -
Cpe01g00442 1390 Gene3D - 703 850 IPR038718 -
Cpe01g00442 1390 Gene3D - 444 646 IPR038718 -
Cpe01g00442 1390 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 448 681 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00442 K10875 RAD54L, RAD54; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-] - csv:101218846 1240.71
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00442 Cpe-Chr1:2546992 Cpe07g00812 Cpe-Chr7:7252531 4.86E-24 dispersed
Cpe01g00442 Cpe-Chr1:2546992 Cpe05g00071 Cpe-Chr5:353314 5.74E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g427 Blo02g00835 . . . . . Bma05g00518 . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1099 . . . . . . . . . . . . . . . . . . . . . . . Cpe01g00442 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009997 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48749 PF00176 SNF2_N 3.90E-39 CL0023 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00442 Cpe_Chr01 FPKM 378.617676 419.312408 210.649323 217.774948 267.546661 263.233948 258.475067 142.02327 147.386353 136.935532