Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00449 ATGGAGTTGAAACCTGGATTATCGGCTATTGTCACCGGCGGAGCTTCTGGAATCGGGAGAGCTCTCTGCTTAGCTCTAGGAGAGAAGGGAGTATTTGTGACTGTGGTTGATCTTTCTGAAGAAAAGGGGCAGGAAGTTGCATCCATTATCCAACAAAAGAATGCCAATCTTCACCCTAAGTTAGACATTCCTCCTGCAATGTTCATAAGATGTGATGTTACCAACAGAAATGACCTACAGAAGGCTTTCGGAAAGCATTTAGCAACATATGGAGGATTAGATATATGTATAAACAGTGCTGGAATTGCCAGCAAAATAGTATTTCATAATGATCAAACTGATGGTGCTCAAACATGGAGACGTATCATTGATGTCAACCTCATTTCTGCCATGGCATGCACTCAACTTGCGATAAAAGCCATGGAATCAATGAAAAAACCTGGTGTAATTGTCAACCTTGGTTCTGCTGCTGGTCTTTATCCACTTTCCTCAGATCCAGCCTATACTGCTTCCAAAGGTGGTGTTGTTATGTTTACTAGAGCACTTTTACCTTACAAACGCAAGGGGATTCGGGTCAATGTGCTTTGTCCTGAGTTTGTAAAAACAGAGCTGGCTGCGACAGCAGTAGGTGAAAAGTTCACAGAACGGATAGGAGGTTATGTTCCCATGGAAATGGTGATTAAAGGTACTTTCGAACTAATCACTGATGAGAGCAAAGCTGGTTCATGCCTGTGGATTTCAAACCGCAGAGGGATGGAGTACTCGCCCACCCCTGCAGAAGAAGCAAAATACTTGCTTCCGTCCTCGAGTTCAAGAAAAAATTCTTCATCAACATTTTTTCAGAAAATTGAAATTCCCCAAAGTTTTGACAAAGTAGTTGTTCATACTCTGAGCCACAATTTTCGTGAAGCAACTAGCATAGTGCATGCACCATTGAGATTGCCAATCAAACCAGATCAAGTTCTTGTGAAAATCATATATGCGGGTGTAAATGCAAGCGATGTTAATTTCAGCTCAGGTCATTATTTCAGTAACAGCAACAAAGATCTTCAGTCTCTCCTTCCGTTAAATGCTGGTTTCGAGGGTGTGGGAATAATTGCAGCTGTTGGTGATTCTGTCAATCACCTTAAAGTTGGAACTCCTGCAGCAATGATGACATTTGGAAGTTATGCTGAGTTTGTGACGGTTCATTCAAAACATATCCTTCCTGTTGCAAGACCTGATCCAGAAGTTGTTGCCATGCTGACTTCAGGATTAACAGCATCAATTGCTCTAGAAAAGGCAGCGCAAATGGAATCTGGAAAGATTGTTCTTGTTACTGCTGCTGCTGGAGGGACAGGCCAATTTGCTGTCCAGCTTGCCAAGTTAGCTGGAAATAAGGTTGTTGCAACATGTGGTGGTAAGGACAAAGCCACGCTTTTGAAACAATTGGGAGTTGATCGAGTCATAGATTACAGATCTGAAGACGTTAAAACTGTTTTAAAGACAGAGTATCCTAAAGGCGTCGACATCATCTATGAATCGGTCGGAGGCGATATGTTTAGTCTGTGCTTGAATGCATTGGCAGTCTACGGACGACTAGTTGTGATCGGAATGATCTCACAGTATCAAGGAGAACAGGGGTGGGAGCCATCAAATTACCCAGGAATTTGTGAGAAAATTCTGAAGAAGAGCCAAACTATTGCTGGGTTCTTCCTCATACAATATGCTCACCTCTGGCAACAACATTTGGATACACTATTTCGTCTTTTCTCCTCAGGCAAACTGAAGGTTTCCGTGGATCCGAAAAGGTTTTTAGGCGTCCAATCCGTCGTAGACGCCGTTGAATATCTTCATTCGGGCAAAAGTGTTGGGAAGCAAATACTTTGGGTTAAAACAAAACAAAACAGGTTGTTGTTTGCATTGATCCAACCTTCATTGAACCCAAGCCAAAGCTCTGACCCTGAAAATGATACCAACTTCGGAGCAGCCGTGCAAGAACAAGAACAAGAACAAGAACAAGAACAAGAACAACGTAAGCTAATTCCGCTGCAAAGTTCTAAAGATCCAAAAAACCATGCAGGGAAGCCTCATGGATGA 2079 42.52 MELKPGLSAIVTGGASGIGRALCLALGEKGVFVTVVDLSEEKGQEVASIIQQKNANLHPKLDIPPAMFIRCDVTNRNDLQKAFGKHLATYGGLDICINSAGIASKIVFHNDQTDGAQTWRRIIDVNLISAMACTQLAIKAMESMKKPGVIVNLGSAAGLYPLSSDPAYTASKGGVVMFTRALLPYKRKGIRVNVLCPEFVKTELAATAVGEKFTERIGGYVPMEMVIKGTFELITDESKAGSCLWISNRRGMEYSPTPAEEAKYLLPSSSSRKNSSSTFFQKIEIPQSFDKVVVHTLSHNFREATSIVHAPLRLPIKPDQVLVKIIYAGVNASDVNFSSGHYFSNSNKDLQSLLPLNAGFEGVGIIAAVGDSVNHLKVGTPAAMMTFGSYAEFVTVHSKHILPVARPDPEVVAMLTSGLTASIALEKAAQMESGKIVLVTAAAGGTGQFAVQLAKLAGNKVVATCGGKDKATLLKQLGVDRVIDYRSEDVKTVLKTEYPKGVDIIYESVGGDMFSLCLNALAVYGRLVVIGMISQYQGEQGWEPSNYPGICEKILKKSQTIAGFFLIQYAHLWQQHLDTLFRLFSSGKLKVSVDPKRFLGVQSVVDAVEYLHSGKSVGKQILWVKTKQNRLLFALIQPSLNPSQSSDPENDTNFGAAVQEQEQEQEQEQEQRKLIPLQSSKDPKNHAGKPHG 692
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2592785 2602502 + Cp4.1LG01g02300.1 Cpe01g00449 461762

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00449 692 SMART PKS_ER_names_mod 304 622 IPR020843 GO:0016491
Cpe01g00449 692 SUPERFAMILY GroES-like 299 438 IPR011032 -
Cpe01g00449 692 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 187 IPR002347 -
Cpe01g00449 692 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 156 IPR002347 -
Cpe01g00449 692 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 91 102 IPR002347 -
Cpe01g00449 692 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 95 622 - -
Cpe01g00449 692 PANTHER BNAA08G02470D PROTEIN 95 622 - -
Cpe01g00449 692 Pfam Alcohol dehydrogenase GroES-like domain 318 385 IPR013154 -
Cpe01g00449 692 Pfam Zinc-binding dehydrogenase 445 579 IPR013149 -
Cpe01g00449 692 Pfam short chain dehydrogenase 9 207 IPR002347 -
Cpe01g00449 692 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 410 588 IPR036291 -
Cpe01g00449 692 CDD Mgc45594_like 288 619 - -
Cpe01g00449 692 PRINTS Glucose/ribitol dehydrogenase family signature 188 205 IPR002347 -
Cpe01g00449 692 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Cpe01g00449 692 PRINTS Glucose/ribitol dehydrogenase family signature 91 102 IPR002347 -
Cpe01g00449 692 PRINTS Glucose/ribitol dehydrogenase family signature 142 158 IPR002347 -
Cpe01g00449 692 PRINTS Glucose/ribitol dehydrogenase family signature 168 187 IPR002347 -
Cpe01g00449 692 MobiDBLite consensus disorder prediction 665 692 - -
Cpe01g00449 692 MobiDBLite consensus disorder prediction 642 662 - -
Cpe01g00449 692 MobiDBLite consensus disorder prediction 642 692 - -
Cpe01g00449 692 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 434 455 IPR002364 GO:0008270|GO:0016491
Cpe01g00449 692 Gene3D - 413 591 - -
Cpe01g00449 692 Gene3D - 294 621 - -
Cpe01g00449 692 Gene3D - 6 266 - -
Cpe01g00449 692 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 226 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00449 - - - csv:101217275 1095.88
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g00449 Cpe14g00299 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00449 Cpe-Chr1:2592785 Cpe07g00050 Cpe-Chr7:233707 2.93E-22 dispersed
Cpe14g00344 Cpe-Chr14:2101605 Cpe01g00449 Cpe-Chr1:2592785 4.53E-17 dispersed
Cpe17g01114 Cpe-Chr17:8441568 Cpe01g00449 Cpe-Chr1:2592785 1.82E-15 dispersed
Cpe04g00394 Cpe-Chr4:4574525 Cpe01g00449 Cpe-Chr1:2592785 1.10E-16 transposed
Cpe04g01156 Cpe-Chr4:9902004 Cpe01g00449 Cpe-Chr1:2592785 1.98E-18 transposed
Cpe04g01180 Cpe-Chr4:10036972 Cpe01g00449 Cpe-Chr1:2592785 2.87E-24 transposed
Cpe05g00743 Cpe-Chr5:4556602 Cpe01g00449 Cpe-Chr1:2592785 5.98E-16 transposed
Cpe10g00828 Cpe-Chr10:4692032 Cpe01g00449 Cpe-Chr1:2592785 1.55E-25 transposed
Cpe13g01026 Cpe-Chr13:8445463 Cpe01g00449 Cpe-Chr1:2592785 5.44E-23 transposed
Cpe15g00283 Cpe-Chr15:3113799 Cpe01g00449 Cpe-Chr1:2592785 4.02E-23 transposed
Cpe20g00778 Cpe-Chr20:6975385 Cpe01g00449 Cpe-Chr1:2592785 1.24E-10 transposed
Cpe01g00449 Cpe-Chr1:2592785 Cpe14g00299 Cpe-Chr14:1752913 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g430 . Blo15g00737 Bda06g01055 . Bpe07g00392 . . Bma12g00464 . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1101 Cone8ag1142 . . . . . . . . . . . . . . . . . . . . . Cpe14g00299 Cpe01g00449 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007124 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00449 Cpe_Chr01 FPKM 13.960947 14.854039 9.150154 10.274019 7.9201 8.585535 10.016847 11.895391 10.847838 11.964392