Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00450 ATGAATCGTGGTAGACCAAGGAAGGAGAAGCTGTTTAGGAGAAAATCTTGGGCCTCAATAACACCACCGGGTACCAGTTATGGTCAAGAAGCGGCGGTTCAAAGCTTTTCACTCCCTAGAAGTGTAAAATTCAAAAGAACGACCATTGATAGCATATACAATGATCGCCAATCTCGTTCCATTGTTATGGCACAAGCAAAGGAGGTTCAAGCAAAACTGCCCCCTGGTTTTCCCAGTTTTATTAAGGTTATGCTCCCATCACATATCACCGGAGGATTTTGGCTGGGTCTTCCAAGGGGATTCTGTGATAGCCATTTGCCAAGGCAGGATACTGCAATGATCTTACAAGATGAAAATGGAATGGCATATCAAACAAAGTATCTATCTGAAAAAACAGGGTTGAGTGCTGGATGGAGAGGTTTCTCACTGGCTCACAACTTACAGCAAGGAGATGTTCTAGTTTTCCATTTGGTTATGCCTAACAAGTTTATGGTTTACATTGTGAGATCCAATGCTGCTGTAGCTGAGGATGGTGGTGCTCCAGGCTTTGAACGTAGGGCCTACAATAAACAAACACCTCTTTATGGCAAAGAAAATGTTCCTTATATGAAGGAGAAACAAATGGCCCTTGACAATGTAAATGGCAAAGAGGCAGACATCCATCCCGTGAAAAATGAAGAAGACGACAATCCCGTCTCCCTTGCAATAGATATCCATAAAGATCACGGGCAAACAAGTGGTCCTGTGCATAAAGATACTGAGATGATGCCTGTGCTAGAAGAGTCTGAAAACAACAGAAACAGTTTTGGTTCCAACTCTATGAACGGAATTCAATTATCGAACTATACTCCAGATTTCGACAAAGTGAAGAGTTTGAATGATTTCATCATTTCAGTCAATGGCTTGGTCATCGACTCCGAGTTCTCCAGTCACTTTAGAGCGAAATACTTCGAGCTATGCTCTAGTCAGAAAGCATTTCTTCACGCGCATATCCTCGAGGGTCTGAACTACAAACTTGTTTCAGGAATTATATCAGAGACCATCAACATAGCTGATGCCATTAGAGCATGCAAGGTTGGCATCACCTCACAAGAACATTATACTACTTGGGACAAAAGTCTGACAGCCTTTGAAGGTCTAGGAATGAACGTAGCGTTTCTTCGATCTCGAATCTATCGATTACTGACTCTCTCAATAAAAATAGAGATGAAAAGAAAAATGGAGCTGAAACGGGACTCAACACAGGAGGAAATACGAACGCTCGTAGCGAAAATCATGGAAGCAAGAGCAGCTGTAAAGCAACTAGAAGCTGAAATTCAGTGTCTAGAGAACACTGATGGTGGGAATATGGAGGCATTGTTCAAGGAAGTGGCCAGCGCCCCTTGGTAG 1389 42.69 MNRGRPRKEKLFRRKSWASITPPGTSYGQEAAVQSFSLPRSVKFKRTTIDSIYNDRQSRSIVMAQAKEVQAKLPPGFPSFIKVMLPSHITGGFWLGLPRGFCDSHLPRQDTAMILQDENGMAYQTKYLSEKTGLSAGWRGFSLAHNLQQGDVLVFHLVMPNKFMVYIVRSNAAVAEDGGAPGFERRAYNKQTPLYGKENVPYMKEKQMALDNVNGKEADIHPVKNEEDDNPVSLAIDIHKDHGQTSGPVHKDTEMMPVLEESENNRNSFGSNSMNGIQLSNYTPDFDKVKSLNDFIISVNGLVIDSEFSSHFRAKYFELCSSQKAFLHAHILEGLNYKLVSGIISETINIADAIRACKVGITSQEHYTTWDKSLTAFEGLGMNVAFLRSRIYRLLTLSIKIEMKRKMELKRDSTQEEIRTLVAKIMEARAAVKQLEAEIQCLENTDGGNMEALFKEVASAPW 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2603336 2607895 - Cp4.1LG01g01950.1 Cpe01g00450 461763

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00450 462 CDD B3_DNA 78 169 IPR003340 GO:0003677
Cpe01g00450 462 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0234100 49 358 - -
Cpe01g00450 462 Coils Coil 404 445 - -
Cpe01g00450 462 ProSiteProfiles B3 DNA-binding domain profile. 80 171 IPR003340 GO:0003677
Cpe01g00450 462 SUPERFAMILY DNA-binding pseudobarrel domain 74 171 IPR015300 -
Cpe01g00450 462 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 49 358 IPR044837 -
Cpe01g00450 462 SMART B3_2 80 171 IPR003340 GO:0003677
Cpe01g00450 462 Gene3D - 57 172 IPR015300 -
Cpe01g00450 462 Pfam B3 DNA binding domain 80 170 IPR003340 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00450 - - - cpep:111802574 914.45
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g00450 Cpe04g00274 CCT
Cpe01g00450 Cpe04g00274 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00450 Cpe-Chr1:2603336 Cpe16g00019 Cpe-Chr16:251196 1.22E-10 dispersed
Cpe05g01126 Cpe-Chr5:7613215 Cpe01g00450 Cpe-Chr1:2603336 8.07E-83 transposed
Cpe01g00450 Cpe-Chr1:2603336 Cpe15g00494 Cpe-Chr15:5895248 1.32E-41 wgd
Cpe01g00450 Cpe-Chr1:2603336 Cpe02g00152 Cpe-Chr2:782926 2.95E-09 wgd
Cpe01g00450 Cpe-Chr1:2603336 Cpe04g00274 Cpe-Chr4:3411573 8.58E-44 wgd
Cpe01g00450 Cpe-Chr1:2603336 Cpe07g00470 Cpe-Chr7:3015036 2.87E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g432 . . . . . . . . . Cmo11g01356 . . . . . Cpe04g00274 . . . . . . . . Cla02g00594 . . . . . . . . Cone3ag1105 . . . . Cme01g00041 . . . . . . . . . . . . . . . . Cpe01g00450 . . . . . . . . . . . . . . . . Chy01g00047 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012618 0 2 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 0 1 5 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48750 PF02362 B3 4.40E-15 CL0405 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00450 Cpe_Chr01 FPKM 5.730581 6.725425 11.349415 10.885139 13.501953 13.486862 14.057653 11.796952 12.11075 12.479252