Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00451 ATGTTGAGCGGCGGTGTCGGCGGTGGAAGCGTTTACTGGGGTACGAGGAACGAGCCCAGGATTTGTAGAGGGGTTGTCGTTCTCTTCGCTTGGGTTTCGATTCAGCATCGCCACTTGGATAAGTTCGTCCAGCTTTACGCCTCGCTTGGATGGAATTCCCTTGTTTGTTATGCTGATTTTCTCAATATATTTGATCCTGAAAGAGCTACATCACTGGCATTTCTTGTTCTTAATGAGCTCGTTGAGGAGCTAAGAATGAAGCTGCGTCCTGTAGTTTTTGTAGGTCTAAGTGGTGCATCAAAGGCTTGTATGTGCAGAGTTTTGCAGATCATTGAGGGAAGATGTGGCAGTCCACTTTACATGGCGGAATGTCGAATGATCAGAGCTTGTGTTTCTGGGCACATCTATGATTCCAGTCCCATAGAGCTTATAAGTGACTTGGGCGCTCGATTTGCCATACATCCTGCTGTTCTAAAAGTGCCCGGATCGTCACAACTCATCTCCTGGCTTGCTAAAGGCGTCTCTTCTGGTCTTGATGCTCTATATCTTACTAGATTTGATTCACAGCGCGATGAGTATTGGCGAACACTGTGTTCATCTGTTAATATTGGTGCTCCATTTCTCATTATGTGCTCTGAAAAGGACGATCGTGCTCCGTATAAAGTTATCTGTGATTTCACCAAGAGTATTCAAGAATTAGGGGCTGATGTTCAGTTGGTAAAATTCAAAGACTCCCCACACTTAGGTCATTACAAAAATTACCCAGCTCAATATAGAGCTGCTGTGACCATATTTCTTGAGAAGGCATCATCAGTTTACTCCCACAAAATCCCACAATTTAAAGGAGAAAGAAGAGGAATGGAAGGCGATGGAATGCCTGAATTGATATGTGACCTTCAGAATGCAGCAGTTAATTCAAACCAGAGTTTTCGAAGAGTCGCAGTCGGGCCAAGTGATCATTTCTTCTTGCCAAGCTCAGCAGATTCCCAGGACGGTCGGGAGCATCATCCTCCCATGCCTGATCAGAAAGAAAGAATATCTCCACTTTCAAGCCCCCAAGGAATCAGTGCACACAGCGTACTCGGCCAGTTCCTCTTCGACGTTTGTGTGCCCAAAAATGTTGAAGGTTGGGACATCAAGTTCCACGGCTCTCTGAACGGGCAACCACTTGCTTCAGCTCGCAGGCACTCTCCCTTCCCCGGTACAAAGCTTATCCGTCGCTCTAGACTGTGA 1233 46.23 MLSGGVGGGSVYWGTRNEPRICRGVVVLFAWVSIQHRHLDKFVQLYASLGWNSLVCYADFLNIFDPERATSLAFLVLNELVEELRMKLRPVVFVGLSGASKACMCRVLQIIEGRCGSPLYMAECRMIRACVSGHIYDSSPIELISDLGARFAIHPAVLKVPGSSQLISWLAKGVSSGLDALYLTRFDSQRDEYWRTLCSSVNIGAPFLIMCSEKDDRAPYKVICDFTKSIQELGADVQLVKFKDSPHLGHYKNYPAQYRAAVTIFLEKASSVYSHKIPQFKGERRGMEGDGMPELICDLQNAAVNSNQSFRRVAVGPSDHFFLPSSADSQDGREHHPPMPDQKERISPLSSPQGISAHSVLGQFLFDVCVPKNVEGWDIKFHGSLNGQPLASARRHSPFPGTKLIRRSRL 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2611157 2614643 - Cp4.1LG01g01980.1 Cpe01g00451 461764

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00451 410 Pfam Eukaryotic protein of unknown function (DUF829) 131 377 IPR008547 -
Cpe01g00451 410 SUPERFAMILY alpha/beta-Hydrolases 141 268 IPR029058 -
Cpe01g00451 410 MobiDBLite consensus disorder prediction 391 410 - -
Cpe01g00451 410 Gene3D alpha/beta hydrolase 152 269 IPR029058 -
Cpe01g00451 410 PANTHER UNCHARACTERIZED 6 344 IPR008547 -
Cpe01g00451 410 MobiDBLite consensus disorder prediction 324 352 - -
Cpe01g00451 410 PANTHER DUF829 DOMAIN PROTEIN 6 344 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00451 - - - cmax:111480388 822.002
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g00451 Cpe14g00300 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00451 Cpe-Chr1:2611157 Cpe14g00300 Cpe-Chr14:1764983 0 wgd
Cpe01g00451 Cpe-Chr1:2611157 Cpe06g00151 Cpe-Chr6:820223 3.62E-96 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g434 Blo02g00836 Blo15g00736 Bda06g01054 Bda08g00853 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1106 . . . . . . . . . . . . . . . . . . . . Cpe14g00300 Cpe01g00451 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004102 6 1 2 0 0 0 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 6 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00451 Cpe_Chr01 FPKM 9.028871 9.543516 4.937913 5.227443 11.608869 11.819124 11.666041 4.812989 4.827965 4.964309