Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00454 ATGTCATTCCGAAGTATAGTTCGTGATGTGAGGGATAGCATTGGGAGCTTATCTAGACGGGGTTTCGAGGTCAAGCTGAGTGGTCATCATAGAGGAAAGTCCAATGCATCGTCGTTAAACGATCTACACGACCAGCCTCCTGTTGTTCAGAATGGCTGCTGGGCTAACCTTCCACCTGAACTGTTGTATGATGTCATTCGAAGACTCGAAGAGAGTGAAAGCACATGGCCTTCACGACGGAATGTCGTTGCCTGTGCTGCGGTATGTCGTTCTTGGAGAGTTATGTGCATGGAGATCGTTAAAGGCCCCGAAATTTGTGGCAAGCTTACCTTCCCTGTGTCACTTAAGCAGCCCGGGCCACGCGATACGTCGGTACAGTGCTTCATTAAGAGGGATAAATCCAGTTTAACATACCACCTCTACTTGTGTCTTAGCCCTGCTCTGCTCGTCGAAAATGGGAAGTTTCTTCTTGCTGCTAAGCGTACACGAAGAACTACCAGTACAGAGTACGTTATCTCAATGGATGCAGATAACATTTCGAGATCTAGTAGCACGTACATCGGAAAGCTGAGGTCGAATTTTCTTGGCACGAAATTCATTGTCTATGATACTCAACCACCATATGCCGCTGCTCCGCTCCCTCATCCCGGGAAAACTAGCCGTAGATTTTACTCGAAAAAGGTCTCGCCAAAAGTCCCAACTGGCAGTTACAACATAGCCCATATAAGTTACGAACTAAACGTCTTAGGCACACGAGGACCCCGAAGAATGCATTGTATAATGCATTCGATACCAGTAGCAGCTCTCGATGCAGGCGGTACAGTTCCAGGCCAACCCGAGCTCCTCCCTCCGAACTCCCTCGACGAATCGTTTCGGAGTGCATCGTTCTCCAAGACACTAGATCATTCCATGGAGTTCAGTAGTGCAAGATTTTCCGAAATCGGCCGAGCAGCATTAGACGGTGACGGAGAGGGAAAGATGAGACCTTTAGTTCTTAAAAACAAGCCACCAAGATGGCACGAACAACTGCAATGTTGGTGTCTCAACTTTCGCGGGCGAGTAACCGTTGCATCGGTGAAGAACTTTCAGTTGATCGCCGCAACTCAGCCAGCTGCTGGCGCTCCAACACCATCTCAACCAGGTCCTCCCGAGCACGACAAGATCATCCTACAGTTCGGGAAGGGTTAG 1188 48.99 MSFRSIVRDVRDSIGSLSRRGFEVKLSGHHRGKSNASSLNDLHDQPPVVQNGCWANLPPELLYDVIRRLEESESTWPSRRNVVACAAVCRSWRVMCMEIVKGPEICGKLTFPVSLKQPGPRDTSVQCFIKRDKSSLTYHLYLCLSPALLVENGKFLLAAKRTRRTTSTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIVYDTQPPYAAAPLPHPGKTSRRFYSKKVSPKVPTGSYNIAHISYELNVLGTRGPRRMHCIMHSIPVAALDAGGTVPGQPELLPPNSLDESFRSASFSKTLDHSMEFSSARFSEIGRAALDGDGEGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPGPPEHDKIILQFGKG 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2623952 2627683 - Cp4.1LG01g02000.1 Cpe01g00454 461767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00454 395 Gene3D Tubby Protein; Chain A 113 395 IPR025659 -
Cpe01g00454 395 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Cpe01g00454 395 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Cpe01g00454 395 PRINTS Tubby superfamily signature 332 349 IPR000007 -
Cpe01g00454 395 PRINTS Tubby superfamily signature 385 395 IPR000007 -
Cpe01g00454 395 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Cpe01g00454 395 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Cpe01g00454 395 Pfam Tub family 115 394 IPR000007 -
Cpe01g00454 395 Gene3D - 49 101 - -
Cpe01g00454 395 PANTHER TUBBY-RELATED 1 394 - -
Cpe01g00454 395 SUPERFAMILY Tubby C-terminal domain-like 103 394 IPR025659 -
Cpe01g00454 395 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515
Cpe01g00454 395 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 394 - -
Cpe01g00454 395 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
Cpe01g00454 395 Pfam F-box domain 54 100 IPR001810 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00454 Cpe-Chr1:2623952 Cpe02g00859 Cpe-Chr2:5722716 0 dispersed
Cpe01g00454 Cpe-Chr1:2623952 Cpe14g00302 Cpe-Chr14:1776558 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48751 PF01167 Tub 4.30E-93 CL0395 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00454 K19600 - csv:101216314 764.607