Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe01g00454 | ATGTCATTCCGAAGTATAGTTCGTGATGTGAGGGATAGCATTGGGAGCTTATCTAGACGGGGTTTCGAGGTCAAGCTGAGTGGTCATCATAGAGGAAAGTCCAATGCATCGTCGTTAAACGATCTACACGACCAGCCTCCTGTTGTTCAGAATGGCTGCTGGGCTAACCTTCCACCTGAACTGTTGTATGATGTCATTCGAAGACTCGAAGAGAGTGAAAGCACATGGCCTTCACGACGGAATGTCGTTGCCTGTGCTGCGGTATGTCGTTCTTGGAGAGTTATGTGCATGGAGATCGTTAAAGGCCCCGAAATTTGTGGCAAGCTTACCTTCCCTGTGTCACTTAAGCAGCCCGGGCCACGCGATACGTCGGTACAGTGCTTCATTAAGAGGGATAAATCCAGTTTAACATACCACCTCTACTTGTGTCTTAGCCCTGCTCTGCTCGTCGAAAATGGGAAGTTTCTTCTTGCTGCTAAGCGTACACGAAGAACTACCAGTACAGAGTACGTTATCTCAATGGATGCAGATAACATTTCGAGATCTAGTAGCACGTACATCGGAAAGCTGAGGTCGAATTTTCTTGGCACGAAATTCATTGTCTATGATACTCAACCACCATATGCCGCTGCTCCGCTCCCTCATCCCGGGAAAACTAGCCGTAGATTTTACTCGAAAAAGGTCTCGCCAAAAGTCCCAACTGGCAGTTACAACATAGCCCATATAAGTTACGAACTAAACGTCTTAGGCACACGAGGACCCCGAAGAATGCATTGTATAATGCATTCGATACCAGTAGCAGCTCTCGATGCAGGCGGTACAGTTCCAGGCCAACCCGAGCTCCTCCCTCCGAACTCCCTCGACGAATCGTTTCGGAGTGCATCGTTCTCCAAGACACTAGATCATTCCATGGAGTTCAGTAGTGCAAGATTTTCCGAAATCGGCCGAGCAGCATTAGACGGTGACGGAGAGGGAAAGATGAGACCTTTAGTTCTTAAAAACAAGCCACCAAGATGGCACGAACAACTGCAATGTTGGTGTCTCAACTTTCGCGGGCGAGTAACCGTTGCATCGGTGAAGAACTTTCAGTTGATCGCCGCAACTCAGCCAGCTGCTGGCGCTCCAACACCATCTCAACCAGGTCCTCCCGAGCACGACAAGATCATCCTACAGTTCGGGAAGGGTTAG | 1188 | 48.99 | MSFRSIVRDVRDSIGSLSRRGFEVKLSGHHRGKSNASSLNDLHDQPPVVQNGCWANLPPELLYDVIRRLEESESTWPSRRNVVACAAVCRSWRVMCMEIVKGPEICGKLTFPVSLKQPGPRDTSVQCFIKRDKSSLTYHLYLCLSPALLVENGKFLLAAKRTRRTTSTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIVYDTQPPYAAAPLPHPGKTSRRFYSKKVSPKVPTGSYNIAHISYELNVLGTRGPRRMHCIMHSIPVAALDAGGTVPGQPELLPPNSLDESFRSASFSKTLDHSMEFSSARFSEIGRAALDGDGEGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPGPPEHDKIILQFGKG | 395 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 2623952 | 2627683 | - | Cp4.1LG01g02000.1 | Cpe01g00454 | 461767 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe01g00454 | 395 | Gene3D | Tubby Protein; Chain A | 113 | 395 | IPR025659 | - | |
Cpe01g00454 | 395 | PRINTS | Tubby superfamily signature | 186 | 210 | IPR000007 | - | |
Cpe01g00454 | 395 | PRINTS | Tubby superfamily signature | 236 | 263 | IPR000007 | - | |
Cpe01g00454 | 395 | PRINTS | Tubby superfamily signature | 332 | 349 | IPR000007 | - | |
Cpe01g00454 | 395 | PRINTS | Tubby superfamily signature | 385 | 395 | IPR000007 | - | |
Cpe01g00454 | 395 | PRINTS | Tubby superfamily signature | 170 | 186 | IPR000007 | - | |
Cpe01g00454 | 395 | PRINTS | Tubby superfamily signature | 350 | 366 | IPR000007 | - | |
Cpe01g00454 | 395 | Pfam | Tub family | 115 | 394 | IPR000007 | - | |
Cpe01g00454 | 395 | Gene3D | - | 49 | 101 | - | - | |
Cpe01g00454 | 395 | PANTHER | TUBBY-RELATED | 1 | 394 | - | - | |
Cpe01g00454 | 395 | SUPERFAMILY | Tubby C-terminal domain-like | 103 | 394 | IPR025659 | - | |
Cpe01g00454 | 395 | SUPERFAMILY | F-box domain | 45 | 97 | IPR036047 | GO:0005515 | |
Cpe01g00454 | 395 | PANTHER | TUBBY-LIKE F-BOX PROTEIN 10-RELATED | 1 | 394 | - | - | |
Cpe01g00454 | 395 | ProSitePatterns | Tub family signature 1. | 350 | 363 | IPR018066 | - | |
Cpe01g00454 | 395 | Pfam | F-box domain | 54 | 100 | IPR001810 | GO:0005515 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g00454 | Cpe-Chr1:2623952 | Cpe02g00859 | Cpe-Chr2:5722716 | 0 | dispersed | |
Cpe01g00454 | Cpe-Chr1:2623952 | Cpe14g00302 | Cpe-Chr14:1776558 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48751 | PF01167 | Tub | 4.30E-93 | CL0395 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe01g00454 | K19600 | - | csv:101216314 | 764.607 |